LXN Gene
protein-coding GIFtS : 52
GCID: GC03 M158366
latexin
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Aliasesfor LXN gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Latexin 1 Tissue Carboxypeptidase Inhibitor2 3 ECI2 3 5 MUM2 TCI2 3 5 Protein MUM3 Endogenous Carboxypeptidase Inhibitor2 3
Export aliases for LXN gene to outside databases Previous GC identifers: GC03M155644 GC03M159331 GC03M159645 GC03M159705 GC03M159866 GC03M155780
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Summariesfor LXN gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for LXN : This gene encodes the only known protein inhibitor of zinc-dependent metallocarboxypeptidases. (provided by RefSeq, Oct 2008) UniProtKB/Swiss-Prot: LXN_HUMAN, Q9BS40 Function : Hardly reversible, non-competitive, and potent inhibitor of CPA1, CPA2 and CPA4. May play a role ininflammation
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Genomic Viewsfor LXN gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000003.11 NC_018914.1 NT_005612.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the LXN gene promoter: Max1 AML1a Nkx2-5 HNF-3beta IRF-2 FOXO4 SEF-1 (1) FOXO1a c-Myc FOXO1 Other transcription factors Search SABiosciences Chromatin IP Primers for LXN Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LXN
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 3q25.32 Ensembl cytogenetic band: 3q25.32 HGNC cytogenetic band: 3q25.32 LXN Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 3 GeneLoc Exon Structure
GeneLoc location for GC03M158366: view genomic region
(about GC identifiers )
Start:
158,363,611 bp from pter
End:
158,390,482 bp from pter
Size:
26,872 bases
Orientation:
minus strand
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Proteinsfor LXN gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: LXN_HUMAN, Q9BS40 (See
protein sequence )Recommended Name: Latexin Size : 222 amino acids; 25750 Da
Subcellular location : Cytoplasm (Probable)
1 PDB 3D structure from and Proteopedia for LXN :2BO9 (3D)
 
Secondary accessions : Q96PN2 Q9NQS6Explore the universe of human proteins at neXtProt for LXN: NX_Q9BS40 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9BS40 LXN Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_064554.3 ENSEMBL proteins: ENSP00000419373 ENSP00000264265 Human Recombinant Protein Products for LXN: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005737 cytoplasm
IEA --
LXN for ontologies About GeneDecksing LXN Antibody Products: Assay Products for LXN:
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Protein
Domains / Familiesfor LXN gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
LXN for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q9BS40 ProtoNet protein and cluster: Q9BS40
1 Blocks protein family : IPB009684 Proteinase inhibitor I47 UniProtKB/Swiss-Prot: LXN_HUMAN, Q9BS40 Similarity : Belongs to the protease inhibitor I47 (latexin) family
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Functionfor LXN gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: LXN_HUMAN, Q9BS40 Function : Hardly reversible, non-competitive, and potent inhibitor of CPA1, CPA2 and CPA4. May play a role ininflammation
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0008191 metalloendopeptidase inhibitor activity
IEA -- GO:0008201 heparin binding
IEA --
LXN for ontologies About GeneDecksing Phenotypes: 1 GenomeRNAi human phenotype for LXN : 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Lxn) :
LXN for phenotypes About GeneDecksing Animal Models: Mouse knock-out Lxn tm1Yari for LXNClone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for LXN (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for LXN (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: LXN (NM_032242 ) Sino Biological Human cDNA Clone for LXN DNA2.0 Custom Codon Optimized Gene
Synthesis Service for LXN Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat LXN
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LXN
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Pathways & Interactionsfor LXN gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for LXN STRING Interaction
Network Preview (showing 5 interactants - click image to see 10)5/10 Interacting proteins for LXN (Q9BS40 1 , 3 ENSP00000264265 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 10 )Interactant Interaction Details GeneCard External ID(s) CIRBP Q14011 1 , 3 , ENSP00000322887 4 EBI-1044504,EBI-538850 I2D:
score=2 STRING: ENSP00000322887 KIAA1009 Q5TB80 1 , 3 , ENSP00000385215 4 EBI-1044504,EBI-1059012 I2D:
score=2 STRING: ENSP00000385215 PPM1A P35813 1 , 3 , ENSP00000327255 4 EBI-1044504,EBI-989143 I2D:
score=2 STRING: ENSP00000327255 THRAP3 Q9Y2W1 1 , 3 , ENSP00000346634 4 EBI-1044504,EBI-352039 I2D:
score=2 STRING: ENSP00000346634 PANK2 Q9BZ23 1 , 3 , ENSP00000313377 4 EBI-1044504,EBI-1058434 I2D:
score=2 STRING: ENSP00000313377
About this table Gene Ontology (GO): 2 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006954 inflammatory response
IEA -- GO:0050965 detection of temperature stimulus involved in sensory perception of pain
IEA --
LXN for ontologies About GeneDecksing
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Drugs & Compoundsfor LXN gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for LXN Search CenterWatch for drugs/clinical trials and news about LXN
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Transcriptsfor LXN gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for LXN gene: NM_020169.3 Unigene Cluster for LXN:
Latexin Hs.478067 [show with all ESTs ] Unigene Representative Sequence: BC005346 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000482640 ENST00000264265 (uc003fch.3 uc011bov.1 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for LXN (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for LXN (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: LXN (NM_032242 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for LXN Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat LXN
Additional cDNA sequence: AF087851.1 AF282594.1 AF282626.1 BC005346.1 BC008438.1
5 DOTS entries : DT.99963069 DT.453576
DT.95331260 DT.97780480 DT.95331287 24/177 AceView cDNA sequences (see all 177 ):
BG940926 BG944101 CB853033 AI638836 CD370776 BM972192 BG941720 BM994209 AW139793 AI630571 AA954088 CD676426 AA422079 AI092299 BX090076 BG941595 AL557781 CA430411 CA412913 CB306141 N55030 AI087271 CA310657 AA436375 GeneLoc Exon Structure
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Expression for LXN gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section LXN expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TCTATTGATGAbout this image LXN expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See LXN Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for LXN SOURCE GeneReport for Unigene cluster: Hs.478067 UniProtKB/Swiss-Prot: LXN_HUMAN, Q9BS40 Tissue specificity : Highly expressed in heart, prostate, ovary, kidney, pancreas, and colon, moderate or low in othertissues including brain SABiosciences Custom PCR Arrays for LXN Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for LXNBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat LXN QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat LXN QIAGEN QuantiFast Probe-based Assays in human , mouse , rat LXN In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LXN
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Orthologsfor LXN gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for LXN gene from 3/10 species (see all 10 ) About this table
ENSEMBL Gene Tree for LXN (if available)TreeFam Gene Tree for LXN (if available)
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Paralogsfor LXN gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for LXN gene RARRES1 2 1 SIMAP similar gene for LXN using alignment to 2 protein entries: LXN_HUMAN (see all proteins ):RARRES1
LXN for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for LXN PGOHUM00000235441
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Genomic Variantsfor LXN gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 3 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for LXN (158363611 - 158390482 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for LXN: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing LXN
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Disorders
/ Diseasesfor LXN gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
LXN for disorders About GeneDecksing
OMIM gene information: 609305
OMIM disorders : --4 diseases for LXN : About MalaCards listeriosis endocervicitis prostatitis carcinoma 2 diseases from the University of Copenhagen DISEASES database for LXN :Endocervicitis Listeriosis Export disorders for LXN gene to outside databases
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Publicationsfor LXN gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for LXN gene, integrated from 9 sources (see all 23 ): (articles sorted by number of sources associating them with LXN) Utopia : connect your pdf to the dynamic world of online information
Cloning, tissue expression pattern and genomic organization of latexin, a human homologue of rat carboxypeptidase A inhibitor. (PubMed id 11455960) 1 , 2 , 9 Liu Q.... Zhao S. (2000) Structure of human carboxypeptidase A4 with its endogenous protein inhibitor, latexin. (PubMed id 15738388) 1 , 2 , 9 Pallares I.... Gomis-Rueth F.-X. (2005) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) A census of human soluble protein complexes. (PubMed id 22939629) 1 Havugimana P.C....Emili A. (2012) Latexin regulates the abundance of multiple cellular p roteins in hematopoietic stem cells. (PubMed id 21567403) 1 Mitsunaga K....Furukawa Y. (2012) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Latexin expression is downregulated in human gastric carcinomas and exhibits tumor suppressor potential. (PubMed id 21466706) 1 Li Y....Ke Y. (2011) hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965) 1 Lamesch P.... Vidal M. (2007) Large-scale mapping of human protein-protein interactions by mass spectrometry. (PubMed id 17353931) 1 Ewing R.M.... Figeys D. (2007) The DNA sequence, annotation and analysis of human chromosome 3. (PubMed id 16641997) 2 Muzny D.M....Gibbs R.A. (2006)
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External Searches for LXN gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing LXN gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing LXN gene
(According to HUGE )
About This Section --
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Specialized Databases showing LXN gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for LXN Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for LXN gene: Search GeneIP for patents involving LXN GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor LXN gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
OriGene Antibodies for LXN OriGene shRNA RFP for LXN OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for LXN OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for LXN OriGene Protein Over-expression Lysate for LXN Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for LXN OriGene 3'-UTR Clone for LXN OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for LXN OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for LXN Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for LXN OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for LXN OriGene Custom Protein Services for LXN OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat LXN QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing LXN QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LXN QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat LXN QIAGEN QuantiFast Probe-based Assays in human , mouse , rat LXN QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat LXN
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Recombinant Protein for LXN
LXN Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LXN
ThermoFisher Antibody for LXN
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat LXN
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Aliases for LXN
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Disorders / Diseases for LXN
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Expression for LXN
Function for LXN
Genomic Views for LXN
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Pathways / Interactions for LXN
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Summaries for LXN
Transcripts for LXN
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