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Aliases for LURAP1L-AS1 Gene

Subcategory (RNA class) for LURAP1L-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LURAP1L-AS1 Gene

  • LURAP1L Antisense RNA 1 2 3 5

External Ids for LURAP1L-AS1 Gene

Previous GeneCards Identifiers for LURAP1L-AS1 Gene

  • GC00U935500

Summaries for LURAP1L-AS1 Gene

GeneCards Summary for LURAP1L-AS1 Gene

LURAP1L-AS1 (LURAP1L Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LURAP1L-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LURAP1L-AS1 Gene

Genomics for LURAP1L-AS1 Gene

GeneHancer (GH) Regulatory Elements for LURAP1L-AS1 Gene

Promoters and enhancers for LURAP1L-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I012811 Enhancer 1.4 Ensembl ENCODE dbSUPER 550.8 -1.5 -1509 8.4 PKNOX1 FOXA2 MLX SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF213 ZNF143 LURAP1L-AS1 LURAP1L GC09M012817
GH09I012774 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.7 +37.5 37486 4.6 FOXA2 ARID4B SIN3A DMAP1 ZNF2 ZNF48 ETS1 YY1 GLIS2 ZNF213 LURAP1L LURAP1L-AS1
GH09I012783 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 5.1 +29.5 29526 3.3 FOXA2 MLX ARID4B NEUROD1 SIN3A FEZF1 YY1 FOS JUNB REST LURAP1L-AS1 LURAP1L
GH09I012718 Enhancer 0.7 Ensembl ENCODE 10.3 +95.7 95655 1.1 CTCF JUND GATA3 POLR2A LURAP1L LURAP1L-AS1 TYRP1 RN7SL849P
GH09I012740 Enhancer 0.5 ENCODE 5.7 +73.6 73608 0.8 ZFHX2 PKNOX1 FOS EGR2 LURAP1L-AS1 RN7SL849P TYRP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LURAP1L-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LURAP1L-AS1 Gene

Genomic Locations for LURAP1L-AS1 Gene
chr9:12,699,999-12,814,389
(GRCh38/hg38)
Size:
114,391 bases
Orientation:
Minus strand

Genomic View for LURAP1L-AS1 Gene

Genes around LURAP1L-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LURAP1L-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LURAP1L-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LURAP1L-AS1 Gene

Proteins for LURAP1L-AS1 Gene

Post-translational modifications for LURAP1L-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LURAP1L-AS1 Gene

Domains & Families for LURAP1L-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LURAP1L-AS1 Gene

Function for LURAP1L-AS1 Gene

Phenotypes From GWAS Catalog for LURAP1L-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LURAP1L-AS1 Gene

Localization for LURAP1L-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LURAP1L-AS1 Gene

Pathways & Interactions for LURAP1L-AS1 Gene

SuperPathways for LURAP1L-AS1 Gene

No Data Available

Interacting Proteins for LURAP1L-AS1 Gene

Gene Ontology (GO) - Biological Process for LURAP1L-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LURAP1L-AS1 Gene

Drugs & Compounds for LURAP1L-AS1 Gene

No Compound Related Data Available

Transcripts for LURAP1L-AS1 Gene

mRNA/cDNA for LURAP1L-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LURAP1L-AS1 Gene

No ASD Table

Relevant External Links for LURAP1L-AS1 Gene

GeneLoc Exon Structure for
LURAP1L-AS1
ECgene alternative splicing isoforms for
LURAP1L-AS1

Expression for LURAP1L-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LURAP1L-AS1 Gene

genes like me logo Genes that share expression patterns with LURAP1L-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LURAP1L-AS1 Gene

Orthologs for LURAP1L-AS1 Gene

Evolution for LURAP1L-AS1 Gene

ENSEMBL:
Gene Tree for LURAP1L-AS1 (if available)
TreeFam:
Gene Tree for LURAP1L-AS1 (if available)

No data available for Orthologs for LURAP1L-AS1 Gene

Paralogs for LURAP1L-AS1 Gene

No data available for Paralogs for LURAP1L-AS1 Gene

Variants for LURAP1L-AS1 Gene

Sequence variations from dbSNP and Humsavar for LURAP1L-AS1 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1063380 benign, Oculocutaneous albinism 12,710,090(-) T/C intron_variant
rs121912778 pathogenic, Oculocutaneous albinism type 3 12,704,564(-) C/T intron_variant
rs140364108 uncertain-significance, Oculocutaneous albinism 12,709,241(-) A/C intron_variant
rs140365820 pathogenic, likely-pathogenic, Oculocutaneous albinism type 3, Albinism 12,704,706(-) G/A intron_variant
rs142323339 uncertain-significance, Oculocutaneous albinism 12,709,750(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LURAP1L-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv12568n54 CNV loss 21841781
esv2422212 CNV duplication 17116639
esv2759671 CNV loss 17122850
esv3619718 CNV gain 21293372
esv3891612 CNV gain 25118596
nsv1016570 CNV loss 25217958
nsv1021844 CNV gain 25217958
nsv1030835 CNV gain 25217958
nsv472191 CNV novel sequence insertion 20440878
nsv516527 CNV loss 19592680
nsv518878 CNV loss 19592680
nsv613613 CNV loss 21841781
nsv818690 CNV loss 17921354
nsv8420 CNV loss 18304495

Additional Variant Information for LURAP1L-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LURAP1L-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LURAP1L-AS1 Gene

Disorders for LURAP1L-AS1 Gene

Additional Disease Information for LURAP1L-AS1

No disorders were found for LURAP1L-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LURAP1L-AS1 Gene

Publications for LURAP1L-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LURAP1L-AS1 Gene

Sources for LURAP1L-AS1 Gene

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