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Aliases for LSM12 Gene

Aliases for LSM12 Gene

  • LSM12 Homolog 2 3 5
  • LSM12 Homolog (S. Cerevisiae) 2
  • Protein LSM12 Homolog 3
  • PNAS-135 3

External Ids for LSM12 Gene

Previous GeneCards Identifiers for LSM12 Gene

  • GC17M039468
  • GC17M042112
  • GC17M037876

Summaries for LSM12 Gene

GeneCards Summary for LSM12 Gene

LSM12 (LSM12 Homolog) is a Protein Coding gene.

Additional gene information for LSM12 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LSM12 Gene

Genomics for LSM12 Gene

Regulatory Elements for LSM12 Gene

Enhancers for LSM12 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H043926 1.2 FANTOM5 Ensembl ENCODE 24.4 +139.4 139412 2 SOX5 SOX13 GATAD2A TFAP4 TCF7 HMG20A PRDM10 SMAD4 LSM12 C17orf105 MPP2 NAGS PYY ENSG00000221044 CD300LG LOC102724183 LINC01976
GH17H044094 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.4 -29.3 -29285 4 HDGF FOXA2 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 ASB16 G6PC3 TMEM101 ASB16-AS1 LSM12 RNU6-131P C17orf53 HDAC5 ENSG00000221044 PYY
GH17H044344 1.7 FANTOM5 ENCODE dbSUPER 11.8 -279.5 -279539 5 PKNOX1 ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF766 ZNF207 UBTF SLC25A39 MEOX1 C17orf53 RUNDC3A-AS1 TMUB2 MAP3K14-AS1 LSM12 RUNDC3A ASB16-AS1
GH17H043322 1.7 Ensembl ENCODE dbSUPER 11.8 +744.5 744457 1 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 NFYC ENSG00000267340 UBTF ASB16-AS1 ENSG00000267002 DHX8 HMGN1P29 TMUB2 NBR2 PLEKHH3 LINC00910
GH17H043168 1.7 FANTOM5 ENCODE dbSUPER 11.8 +896.6 896553 5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 NBR2 NBR1 TMEM106A C17orf53 LSM12 LINC00854 CNTD1 DHX8 PLEKHH3 ENSG00000267002
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LSM12 on UCSC Golden Path with GeneCards custom track

Promoters for LSM12 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000094709 1419 1601 HDGF PKNOX1 FOXA2 MLX ARNT SIN3A ZNF2 YY1 SLC30A9 ZNF207

Genomic Location for LSM12 Gene

Chromosome:
17
Start:
44,034,635 bp from pter
End:
44,067,619 bp from pter
Size:
32,985 bases
Orientation:
Minus strand

Genomic View for LSM12 Gene

Genes around LSM12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LSM12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LSM12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LSM12 Gene

Proteins for LSM12 Gene

  • Protein details for LSM12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3MHD2-LSM12_HUMAN
    Recommended name:
    Protein LSM12 homolog
    Protein Accession:
    Q3MHD2
    Secondary Accessions:
    • Q86YB1
    • Q96NL5

    Protein attributes for LSM12 Gene

    Size:
    195 amino acids
    Molecular mass:
    21701 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LSM12 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LSM12 Gene

Post-translational modifications for LSM12 Gene

  • Ubiquitination at Lys86
  • Modification sites at PhosphoSitePlus

Other Protein References for LSM12 Gene

No data available for DME Specific Peptides for LSM12 Gene

Domains & Families for LSM12 Gene

Gene Families for LSM12 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for LSM12 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for LSM12 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q3MHD2

UniProtKB/Swiss-Prot:

LSM12_HUMAN :
  • Belongs to the LSM12 family.
Family:
  • Belongs to the LSM12 family.
genes like me logo Genes that share domains with LSM12: view

Function for LSM12 Gene

genes like me logo Genes that share phenotypes with LSM12: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for LSM12
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for LSM12 Gene

Localization for LSM12 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LSM12 gene
Compartment Confidence
cytosol 3
nucleus 2
extracellular 1

Subcellular locations from the

Human Protein Atlas (HPA)

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LSM12 Gene

Pathways & Interactions for LSM12 Gene

SuperPathways for LSM12 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LSM12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LSM12 Gene

Drugs & Compounds for LSM12 Gene

No Compound Related Data Available

Transcripts for LSM12 Gene

Unigene Clusters for LSM12 Gene

LSM12 homolog (S. cerevisiae):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for LSM12
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for LSM12 Gene

No ASD Table

Relevant External Links for LSM12 Gene

GeneLoc Exon Structure for
LSM12
ECgene alternative splicing isoforms for
LSM12

Expression for LSM12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LSM12 Gene

Protein differential expression in normal tissues from HIPED for LSM12 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (11.4) and Lung (7.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for LSM12 Gene



Protein tissue co-expression partners for LSM12 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of LSM12 Gene:

LSM12

SOURCE GeneReport for Unigene cluster for LSM12 Gene:

Hs.355570

Evidence on tissue expression from TISSUES for LSM12 Gene

  • Muscle(2)
genes like me logo Genes that share expression patterns with LSM12: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for LSM12 Gene

Orthologs for LSM12 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for LSM12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LSM12 33 34
  • 99.83 (n)
dog
(Canis familiaris)
Mammalia LSM12 33 34
  • 98.63 (n)
cow
(Bos Taurus)
Mammalia LSM12 33 34
  • 98.29 (n)
mouse
(Mus musculus)
Mammalia Lsm12 33 16 34
  • 97.09 (n)
rat
(Rattus norvegicus)
Mammalia Lsm12 33
  • 97.09 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia LSM12 34
  • 91 (a)
OneToOne
chicken
(Gallus gallus)
Aves LSM12 34
  • 94 (a)
OneToOne
TMEM101 33
  • 85.84 (n)
lizard
(Anolis carolinensis)
Reptilia LSM12 34
  • 94 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC394627 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.25564 33
zebrafish
(Danio rerio)
Actinopterygii lsm12b 33 34
  • 78.8 (n)
lsm12a 34
  • 77 (a)
OneToMany
wufe01f11 33
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.10493 33
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002167 33
  • 51.55 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG15735 33 34
  • 46.09 (n)
CG14164 34
  • 30 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes LSM12 34 36
  • 24 (a)
OneToOne
Species where no ortholog for LSM12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LSM12 Gene

ENSEMBL:
Gene Tree for LSM12 (if available)
TreeFam:
Gene Tree for LSM12 (if available)

Paralogs for LSM12 Gene

Pseudogenes.org Pseudogenes for LSM12 Gene

genes like me logo Genes that share paralogs with LSM12: view

No data available for Paralogs for LSM12 Gene

Variants for LSM12 Gene

Sequence variations from dbSNP and Humsavar for LSM12 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000008182 -- 44,059,039(+) TGGGA(A/G)ATTGT intron-variant
rs1000037423 -- 44,045,322(+) TGCCT(G/T)GCCTT intron-variant
rs1000103326 -- 44,048,115(+) TAAGA(C/T)GTATG intron-variant
rs1000162475 -- 44,054,138(+) CCCCT(C/T)GGGAA intron-variant
rs1000235787 -- 44,053,898(+) GCCAG(-/AA)AAAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LSM12 Gene

Variant ID Type Subtype PubMed ID
esv2662976 CNV deletion 23128226
esv3640641 CNV loss 21293372
nsv1146669 OTHER inversion 26484159
nsv833454 CNV loss 17160897

Variation tolerance for LSM12 Gene

Residual Variation Intolerance Score: 54.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.09; 22.20% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LSM12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LSM12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LSM12 Gene

Disorders for LSM12 Gene

Relevant External Links for LSM12

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LSM12

No disorders were found for LSM12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LSM12 Gene

Publications for LSM12 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. Novel Sm-like proteins with long C-terminal tails and associated methyltransferases. (PMID: 15225602) Albrecht M … Lengauer T (FEBS letters 2004) 2 3 60
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60
  4. The scaffold protein KSR1, a novel therapeutic target for the treatment of Merlin-deficient tumors. (PMID: 26549023) Zhou L … Hanemann CO (Oncogene 2016) 3 60
  5. Interactions of the Antiviral Factor Interferon Gamma-Inducible Protein 16 (IFI16) Mediate Immune Signaling and Herpes Simplex Virus-1 Immunosuppression. (PMID: 25693804) Diner BA … Cristea IM (Molecular & cellular proteomics : MCP 2015) 3 60

Products for LSM12 Gene

Sources for LSM12 Gene

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