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Aliases for LRRN1 Gene

Aliases for LRRN1 Gene

  • Leucine Rich Repeat Neuronal 1 2 3 5
  • Neuronal Leucine-Rich Repeat Protein 1 3 4
  • NLRR-1 3 4
  • Fibronectin Type III, Immunoglobulin And Leucine Rich Repeat Domains 3 3
  • Immunoglobulin And Leucine Rich Repeat Domains 3 2
  • Fibronectin Type III 2
  • KIAA1497 4
  • FIGLER3 3

External Ids for LRRN1 Gene

Previous GeneCards Identifiers for LRRN1 Gene

  • GC07M098704
  • GC03P003833
  • GC03P003816

Summaries for LRRN1 Gene

GeneCards Summary for LRRN1 Gene

LRRN1 (Leucine Rich Repeat Neuronal 1) is a Protein Coding gene. An important paralog of this gene is LINGO1.

Gene Wiki entry for LRRN1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LRRN1 Gene

Genomics for LRRN1 Gene

Regulatory Elements for LRRN1 Gene

Enhancers for LRRN1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around LRRN1 on UCSC Golden Path with GeneCards custom track

Promoters for LRRN1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LRRN1 on UCSC Golden Path with GeneCards custom track

Genomic Location for LRRN1 Gene

Chromosome:
3
Start:
3,799,402 bp from pter
End:
3,849,834 bp from pter
Size:
50,433 bases
Orientation:
Plus strand

Genomic View for LRRN1 Gene

Genes around LRRN1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LRRN1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRN1 Gene

Proteins for LRRN1 Gene

  • Protein details for LRRN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6UXK5-LRRN1_HUMAN
    Recommended name:
    Leucine-rich repeat neuronal protein 1
    Protein Accession:
    Q6UXK5
    Secondary Accessions:
    • Q3LID5
    • Q8IYV5
    • Q9H8V1
    • Q9P231

    Protein attributes for LRRN1 Gene

    Size:
    716 amino acids
    Molecular mass:
    80716 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAA96021.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB14500.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for LRRN1 Gene

Proteomics data for LRRN1 Gene at MOPED

Post-translational modifications for LRRN1 Gene

  • Glycosylation at Asn 96, Asn 117, Asn 385, Asn 517, and Thr 571
  • Modification sites at PhosphoSitePlus

Other Protein References for LRRN1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LRRN1 Gene

Domains & Families for LRRN1 Gene

Gene Families for LRRN1 Gene

Suggested Antigen Peptide Sequences for LRRN1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6UXK5

UniProtKB/Swiss-Prot:

LRRN1_HUMAN :
  • Contains 1 fibronectin type-III domain.
  • Contains 11 LRR (leucine-rich) repeats.
Domain:
  • Contains 1 fibronectin type-III domain.
  • Contains 1 Ig-like C2-type (immunoglobulin-like) domain.
  • Contains 1 LRRCT domain.
  • Contains 1 LRRNT domain.
Similarity:
  • Contains 11 LRR (leucine-rich) repeats.
genes like me logo Genes that share domains with LRRN1: view

Function for LRRN1 Gene

genes like me logo Genes that share phenotypes with LRRN1: view

Animal Models for LRRN1 Gene

MGI Knock Outs for LRRN1:

Animal Model Products

  • Taconic Biosciences Mouse Models for LRRN1

miRNA for LRRN1 Gene

miRTarBase miRNAs that target LRRN1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for LRRN1 Gene

Localization for LRRN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LRRN1 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LRRN1 Gene COMPARTMENTS Subcellular localization image for LRRN1 gene
Compartment Confidence
plasma membrane 3
cytosol 2
extracellular 2
endoplasmic reticulum 1
lysosome 1
peroxisome 1
vacuole 1

No data available for Gene Ontology (GO) - Cellular Components for LRRN1 Gene

Pathways & Interactions for LRRN1 Gene

SuperPathways for LRRN1 Gene

No Data Available

Interacting Proteins for LRRN1 Gene

Gene Ontology (GO) - Biological Process for LRRN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0051965 positive regulation of synapse assembly IEA --
genes like me logo Genes that share ontologies with LRRN1: view

No data available for Pathways by source and SIGNOR curated interactions for LRRN1 Gene

Drugs & Compounds for LRRN1 Gene

No Compound Related Data Available

Transcripts for LRRN1 Gene

Unigene Clusters for LRRN1 Gene

Leucine rich repeat neuronal 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LRRN1 Gene

No ASD Table

Relevant External Links for LRRN1 Gene

GeneLoc Exon Structure for
LRRN1
ECgene alternative splicing isoforms for
LRRN1

Expression for LRRN1 Gene

mRNA expression in normal human tissues for LRRN1 Gene

mRNA differential expression in normal tissues according to GTEx for LRRN1 Gene

This gene is overexpressed in Brain - Caudate (basal ganglia) (x5.2), Brain - Nucleus accumbens (basal ganglia) (x5.0), and Brain - Putamen (basal ganglia) (x4.6).

Protein differential expression in normal tissues from HIPED for LRRN1 Gene

This gene is overexpressed in Bone (61.0) and Fetal Brain (7.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for LRRN1 Gene



SOURCE GeneReport for Unigene cluster for LRRN1 Gene Hs.163244

genes like me logo Genes that share expression patterns with LRRN1: view

Protein tissue co-expression partners for LRRN1 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for LRRN1 Gene

Orthologs for LRRN1 Gene

This gene was present in the common ancestor of animals.

Orthologs for LRRN1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia LRRN1 35
  • 91.81 (n)
  • 96.23 (a)
LRRN1 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LRRN1 35
  • 91.85 (n)
  • 97.35 (a)
LRRN1 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Lrrn1 35
  • 87.52 (n)
  • 95.53 (a)
Lrrn1 16
Lrrn1 36
  • 96 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LRRN1 35
  • 99.53 (n)
  • 99.72 (a)
LRRN1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Lrrn1 35
  • 87.85 (n)
  • 95.53 (a)
oppossum
(Monodelphis domestica)
Mammalia LRRN1 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia LRRN1 36
  • 93 (a)
OneToOne
chicken
(Gallus gallus)
Aves LRRN1 35
  • 80.49 (n)
  • 92.74 (a)
LRRN1 36
  • 93 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia LRRN1 36
  • 93 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100492182 35
  • 72.11 (n)
  • 80.59 (a)
Str.5362 35
African clawed frog
(Xenopus laevis)
Amphibia MGC68797 35
zebrafish
(Danio rerio)
Actinopterygii Dr.29044 35
lrrn1 35
  • 71.55 (n)
  • 80.31 (a)
lrrn1 36
  • 80 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG6860 37
  • 42 (a)
caps 36
  • 24 (a)
ManyToMany
CG14762 36
  • 22 (a)
ManyToMany
Fili 36
  • 18 (a)
ManyToMany
trn 36
  • 21 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea lron-11 36
  • 21 (a)
OneToMany
Species with no ortholog for LRRN1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for LRRN1 Gene

ENSEMBL:
Gene Tree for LRRN1 (if available)
TreeFam:
Gene Tree for LRRN1 (if available)

Paralogs for LRRN1 Gene

(2) SIMAP similar genes for LRRN1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with LRRN1: view

Variants for LRRN1 Gene

Sequence variations from dbSNP and Humsavar for LRRN1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs35362954 - 3,845,824(+) AGCCC(C/G)TGTCC reference, missense
rs34611357 - 3,846,745(+) CAGAC(A/C)CCAAG reference, missense
rs730718 -- 3,848,549(+) TCTTG(C/G)TTTTG utr-variant-3-prime
rs744453 -- 3,848,620(+) AATTT(C/T)AGATC utr-variant-3-prime
rs1867431 -- 3,843,569(+) ACTGT(A/G)CCCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LRRN1 Gene

Variant ID Type Subtype PubMed ID
nsv876408 CNV Loss 21882294
esv2752001 CNV Gain 17911159
esv2724816 CNV Deletion 23290073
esv2724818 CNV Deletion 23290073
esv1006927 CNV Deletion 20482838
esv1787606 CNV Deletion 17803354
esv2724819 CNV Deletion 23290073
nsv236590 CNV Loss 16902084
esv2724820 CNV Deletion 23290073
esv3608 CNV Deletion 18987735
esv6311 CNV Loss 19470904
esv1213048 CNV Deletion 17803354

Variation tolerance for LRRN1 Gene

Residual Variation Intolerance Score: 16.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.44; 54.74% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for LRRN1 Gene

Disorders for LRRN1 Gene

Relevant External Links for LRRN1

Genetic Association Database (GAD)
LRRN1
Human Genome Epidemiology (HuGE) Navigator
LRRN1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LRRN1

No disorders were found for LRRN1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LRRN1 Gene

Publications for LRRN1 Gene

  1. Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 10819331) Nagase T. … Ohara O. (DNA Res. 2000) 2 3 4 67
  2. N-MYC promotes cell proliferation through a direct transactivation of neuronal leucine-rich repeat protein-1 (NLRR1) gene in neuroblastoma. (PMID: 18591937) Hossain M.S. … Nakagawara A. (Oncogene 2008) 3 23
  3. Genetics of callous-unemotional behavior in children. (PMID: 23874384) Viding E. … Plomin R. (PLoS ONE 2013) 3
  4. Polymorphisms in leucine-rich repeat genes are associated with autism spectrum disorder susceptibility in populations of European ancestry. (PMID: 20678249) Sousa I. … Monaco A.P. (Mol Autism 2010) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for LRRN1 Gene

Sources for LRRN1 Gene

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