Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

LRRK1 Gene

protein-coding   GIFtS: 54
GCID: GC15P101459

leucine-rich repeat kinase 1

 Explore 1 disease affiliated with
LRRK1 via our new
 Human Malady Compendium 
Biological research products
for LRRK1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Leucine-Rich Repeat Kinase 11 2     FLJ231191
RIPK61 2     Leucine-Rich Repeat Serine/Threonine-Protein Kinase 12
Roco11 2     EC 2.7.11.13
KIAA17901 3     

External Ids:    HGNC: 186081   Entrez Gene: 797052   Ensembl: ENSG000001542377   OMIM: 6109865   UniProtKB: Q38SD23   

Export aliases for LRRK1 gene to outside databases

Previous GC identifers: GC15P099297 GC15P099380 GC15P077581


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Gene Wiki entry for LRRK1


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000015.9  NC_018926.1  NT_010274.17  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the LRRK1 gene promoter:
         AML1a   p300   LCR-F1   Tal-1beta   MEF-2A   Pax-3   HOXA5   aMEF-2   TGIF   ITF-2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for LRRK1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LRRK1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 15q26.3   Ensembl cytogenetic band:  15q26.3   HGNC cytogenetic band: 15q26.3

LRRK1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
LRRK1 gene location

GeneLoc information about chromosome 15         GeneLoc Exon Structure

GeneLoc location for GC15P101459:  view genomic region     (about GC identifiers)

Start:
101,459,420 bp from pter      End:
101,610,317 bp from pter
Size:
150,898 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: LRRK1_HUMAN, Q38SD2 (See protein sequence)
Recommended Name: Leucine-rich repeat serine/threonine-protein kinase 1  
Size: 2015 amino acids; 225393 Da
Cofactor: Magnesium or manganese
Subunit: Homodimer
Subcellular location: Cytoplasm
Sequence caution: Sequence=AAY67799.1; Type=Miscellaneous discrepancy; Note=The cDNA contains a duplication of exon 3;
Sequence=BAB15547.1; Type=Erroneous initiation; Note=Translation N-terminally extended; Sequence=BAC85472.1;
Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: Q6NVH5 Q6NYC0 Q6ZNL9 Q6ZNM9 Q96JN5 Q9H5S3
Alternative splicing: 2 isoforms:  Q38SD2-1   Q38SD2-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for LRRK1: NX_Q38SD2

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q38SD2

  • LRRK1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_078928.3  
    ENSEMBL proteins: 
     ENSP00000373600   ENSP00000435148   ENSP00000433268   ENSP00000433069   ENSP00000431668  
     ENSP00000436672   ENSP00000284395  

    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate: LRRK1
    OriGene Custom Protein Services for LRRK1 
    GenScript Custom Purified and Recombinant Proteins Services for LRRK1
    Novus Biologicals LRRK1 Proteins
    Novus Biologicals LRRK1 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for LRRK1

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737cytoplasm IDA--
    GO:0005739mitochondrion IDA--


    LRRK1 for ontologies           About GeneDecksing



    LRRK1 Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for LRRK1 
    GenScript Custom Superior Antibodies Services for LRRK1
    Novus Biologicals LRRK1 Antibodies
    Search for Antibodies for LRRK1 at Abcam  
    Uscn Antibodies for LRRK1
    ThermoFisher Antibodies for LRRK1

    Assay Products for LRRK1: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for LRRK1
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for LRRK1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    LRRK1 for domains           About GeneDecksing

    5/9 InterPro domains/families (see all 9):
     IPR001611 Leu-rich_rpt
     IPR013684 MIRO-like
     IPR011009 Kinase-like_dom
     IPR000719 Prot_kinase_cat_dom
     IPR003591 Leu-rich_rpt_typical-subtyp

    Graphical View of Domain Structure for InterPro Entry Q38SD2

    ProtoNet protein and cluster: Q38SD2

    1 Blocks protein family: IPB013684 Miro-like

    UniProtKB/Swiss-Prot: LRRK1_HUMAN, Q38SD2
    Similarity: Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. ROCO subfamily
    Similarity: Contains 4 ANK repeats
    Similarity: Contains 13 LRR (leucine-rich) repeats
    Similarity: Contains 1 protein kinase domain
    Similarity: Contains 1 Roc domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: LRRK1_HUMAN, Q38SD2
    Catalytic activity: ATP + a protein = ADP + a phosphoprotein
    Enzyme regulation: Binding of GTP stimulates kinase activity

    Enzyme Number (IUBMB): EC 2.7.11.11

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: LRRK1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat LRRK1
    8/16 QIAGEN miScript miRNA Assays for microRNAs that regulate LRRK1 (see all 16):
    hsa-miR-374b* hsa-miR-495 hsa-miR-1298 hsa-miR-15a hsa-miR-503 hsa-miR-497 hsa-miR-4267 hsa-miR-664
    SwitchGear 3'UTR luciferase reporter plasmidLRRK1 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for LRRK1 (see all 3)
    OriGene siRNA: LRRK1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat LRRK1

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for LRRK1

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for LRRK1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for LRRK1 (see all 2)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: LRRK1 (NM_024652)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for LRRK1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat LRRK1 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for LRRK1
    Search LifeMap BioReagents cell lines for LRRK1

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LRRK1

    Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004674protein serine/threonine kinase activity IEA--
    GO:0005515protein binding IPI19712061
    GO:0005524ATP binding IEA--
    GO:0005525GTP binding IEA--
    GO:0042802identical protein binding IPI--


    LRRK1 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for LRRK1:
     Increased colony dispersion (i 

    Animal Models:
         Mouse knock-out Lrrk1tm1.1Mjff for LRRK1
         1 MGI mutant phenotype (inferred from 1 allele(MGI details for Lrrk1):
     mortality/aging 

    LRRK1 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for LRRK1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 10)

    5/14 Interacting proteins for LRRK1 (Q38SD21, 3 ENSP000003736004) via UniProtKB, MINT, STRING, and/or I2D (see all 14)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    C9orf163Q8N9P63, ENSP000003463454I2D: score=2 STRING: ENSP00000346345
    LYZP616263, ENSP000002612674I2D: score=2 STRING: ENSP00000261267
    S100A8P051093, ENSP000003577214I2D: score=2 STRING: ENSP00000357721
    ABL1P005193, ENSP000003614234I2D: score=1 STRING: ENSP00000361423
    GRB2P629933, ENSP000003390074I2D: score=2 STRING: ENSP00000339007
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007264small GTPase mediated signal transduction IEA--


    LRRK1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for LRRK1

    5 HMDB Compounds for LRRK1    About this table
    CompoundSynonyms CAS #PubMed Ids
    ADPadenosindiphosphorsaeure (see all 8)58-64-0--
    Adenosine triphosphate5'-(tetrahydrogen triphosphate) Adenosine (see all 24)56-65-5--
    Guanosine triphosphate5'-GTP (see all 10)86-01-1--
    MagnesiumMagnesium (see all 2)7439-95-4--
    Manganesemanganese 7439-96-5--
    Search CenterWatch for drugs/clinical trials and news about LRRK1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for LRRK1 gene: 
    NM_024652.3  

    Unigene Cluster for LRRK1:

    Leucine-rich repeat kinase 1
    Hs.407918  [show with all ESTs]
    Unigene Representative Sequence: NM_024652
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000388948(uc002bwr.3 uc010usb.2 uc010usc.2) ENST00000534045
    ENST00000527698 ENST00000532029(uc002bwq.1) ENST00000525284 ENST00000531270
    ENST00000525617 ENST00000538064 ENST00000526457(uc002bws.3) ENST00000525395
    ENST00000532145 ENST00000284395

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: LRRK1
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat LRRK1
    8/16 QIAGEN miScript miRNA Assays for microRNAs that regulate LRRK1 (see all 16):
    hsa-miR-374b* hsa-miR-495 hsa-miR-1298 hsa-miR-15a hsa-miR-503 hsa-miR-497 hsa-miR-4267 hsa-miR-664
    SwitchGear 3'UTR luciferase reporter plasmidLRRK1 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for LRRK1 (see all 3)
    OriGene siRNA: LRRK1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat LRRK1
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for LRRK1 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for LRRK1 (see all 2)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: LRRK1 (NM_024652)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for LRRK1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat LRRK1 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for LRRK1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat LRRK1
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat LRRK1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat LRRK1

    Additional cDNA sequence: 

    AB058693.1 AK026772.1 AK054662.1 AK058028.1 AK094556.1 AK130975.1 AK131075.1 AK225575.1 
    BC005408.1 BC018934.1 BC020379.1 BC066655.1 BC068080.1 BC110293.1 BC144705.1 BC146769.1 
    BC171802.1 DQ013130.1 

    10 DOTS entries:

    DT.100751216  DT.100751215  DT.99929164  DT.113762  DT.40128487  DT.95370489  DT.99999678  DT.308471 
    DT.91829562  DT.97779662 

    24/96 AceView cDNA sequences (see all 96):

    AK054662 BC066655 AA781948 CD742790 CF529459 BE463770 AA742267 AI126719 
    AW241403 AK131075 AW502995 AA430539 AW590768 BQ940155 W60132 BE907578 
    AW502154 NM_024652 BQ187037 BM354115 AI962086 BM469840 AA280028 AK026772 

    GeneLoc Exon Structure

    4 Alternative Splicing Database (ASD) splice patterns (SP) for LRRK1    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19a · 19b · 19c ^ 20 ^ 21 ^ 22
    SP1:                                                                                                              -     -                       -         
    SP2:                                                                                                              -     -                                 
    SP3:                                                                                                              -                                       
    SP4:                                                                                                                    -                       -         


    ECgene alternative splicing isoforms for LRRK1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    LRRK1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GCTGCAGTGA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See LRRK1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for LRRK1

    SOURCE GeneReport for Unigene cluster: Hs.407918
        SABiosciences Custom PCR Arrays for LRRK1
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for LRRK1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat LRRK1
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat LRRK1
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat LRRK1
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LRRK1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for LRRK1 gene from 7/18 species (see all 18)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Lrrk11 , 5 leucine-rich repeat kinase 11, 5 85.37(n)1
    88.88(a)1
      7 (35.57 cM)5
    2333281  NM_146191.31  NP_666303.31 
     662269125 
    chicken
    (Gallus gallus)
    Aves LRRK11 leucine-rich repeat kinase 1 74.7(n)
    78(a)
      415520  XM_003641822.1  XP_003641870.1 
    lizard
    (Anolis carolinensis)
    Reptilia LRRK16
    --
    77(a)
    1 ↔ 1
    GL343332.1(28901-84291)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia Str.133622 Transcribed sequences 78.96(n)    BX729885.1 
    zebrafish
    (Danio rerio)
    Actinopterygii lrrk11 leucine-rich repeat kinase 1 63.34(n)
    60.38(a)
      100332050  XM_002667430.2  XP_002667476.2 
    fruit fly
    (Drosophila melanogaster)
    Insecta Lrrk6
    Leucine-rich repeat kinase
    15(a)
    possible ortholog
    3R(16461910-16469856)
    worm
    (Caenorhabditis elegans)
    Secernentea lrk-16
    Leucine-rich repeat serine/threonine-protein kinas...
    15(a)
    possible ortholog
    I(10879759-10894230)


    ENSEMBL Gene Tree for LRRK1 (if available)
    TreeFam Gene Tree for LRRK1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for LRRK1 gene
    LRRK22  
    6 SIMAP similar genes for LRRK1 using alignment to 8 protein entries:     LRRK1_HUMAN (see all proteins):
    NEK9    PRKCH    MAP3K11    BRAF    MARK4    STK25

    LRRK1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/3226 NCBI SNPs in LRRK1 are shown (see all 3226    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 15 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs113424201,2
    C--77633645(+) AAAAA-/AGAAAA 1 -- int11Minor allele frequency- A:0.00NA 2
    rs354560451,2
    C,--77646531(+) TGACC-/CTCCAC 1 -- int11Minor allele frequency- C:0.00NA 2
    rs782128671,2
    C,--101457481(+) TCTCTC/TGTAAC 1 -- us2k12Minor allele frequency- T:0.11CSA WA 120
    rs1179319371,2
    F,--101457532(+) AGACAT/ACCCAT 1 -- us2k11Minor allele frequency- A:0.03EA 120
    rs46466911,2
    C,--101457572(+) TAGGAG/AAAGGA 1 -- us2k13Minor allele frequency- A:0.01NA EA 124
    rs1925630541,2
    --101457606(+) GGAACA/GTGACT 1 -- us2k10--------
    rs1850417861,2
    --101457657(+) TATGCA/GTGTGC 1 -- us2k10--------
    rs121488491,2
    C,F,--101457805(+) TTGAAG/AGGGGA 1 -- us2k19Minor allele frequency- A:0.19NA WA CSA EA 370
    rs1890752821,2
    --101457845(+) GGAAGA/GCTGTC 1 -- us2k10--------
    rs1810660101,2
    --101457972(+) CCCACA/CCACCT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for LRRK1 (101459420 - 101610317 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 6 variations for LRRK1
         6 CNVs: 2201 7087 8807 3982 49638 7086

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing LRRK1
    DNA2.0 Custom Variant and Variant Library Synthesis for LRRK1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    LRRK1 for disorders           About GeneDecksing

    OMIM gene information: 610986    OMIM disorders: --

    1 disease for LRRK1:    About MalaCards
    parkinson's disease

    1 disease from the University of Copenhagen DISEASES database for LRRK1:
    Parkinson's disease

    3 Novoseek disease relationships for LRRK1 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    parkinson disease, autosomal dominant 87.2 1 17225181 (1)
    parkinson disease 67.9 5 17225181 (2), 17394548 (1), 16243488 (1), 17324517 (1)
    parkinsonism 56.6 4 16243488 (1), 17324517 (1)

    Human Genome Epidemiology (HuGE) Navigator: LRRK1 (3 documents)

    Export disorders for LRRK1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for LRRK1 gene, integrated from 9 sources (see all 25):
    (articles sorted by number of sources associating them with LRRK1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. XX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 11347906)1, 2, 3 Nagase T.... Ohara O. (2001)
    2. LRRK1 protein kinase activity is stimulated upon binding of GTP to its Roc domain. (PubMed id 16243488)1, 2, 9 Korr D.... Weiss B. (2006)
    3. Biochemical characterization of highly purified leucine-rich repeat kinases 1 and 2 demonstrates formation of homodimers. (PubMed id 22952686)1, 2 Civiero L.... Taymans J.M. (2012)
    4. Analysis of the DNA sequence and duplication history of human chromosome 15. (PubMed id 16572171)1, 2 Zody M.C....Nusbaum C. (2006)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    6. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    7. Roc, a Ras/GTPase domain in complex proteins. (PubMed id 14654223)1, 3 Bosgraaf L. and Van Haastert P.J. (2003)
    8. Variants in the LRRK1 gene and susceptibility to Parkinson's disease in Norway. (PubMed id 17324517)1, 9 Haugarvoll K....Farrer M.J. (2007)
    9. Leucine-rich repeat kinase 1: a paralog of LRRK2 and a candidate gene for Parkinson's disease. (PubMed id 17225181)1, 9 Taylor J.P....Farrer M.J. (2007)
    10. Mutations in LRRK2/dardarin associated with Parkinson disease are more toxic than equivalent mutations in the homologous kinase LRRK1. (PubMed id 17394548)1, 9 Greggio E....Cookson M.R. (2007)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 79705 HGNC: 18608 AceView: LRRK1 Ensembl:ENSG00000154237 euGenes: HUgn79705
    ECgene: LRRK1 H-InvDB: LRRK1

    (According to HUGE)
    About This Section
    HUGE: KIAA1790

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for LRRK1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for LRRK1 gene:
    Search GeneIP for patents involving LRRK1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   Browse OriGene shRNA RFPs  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for LRRK1   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for LRRK1  
     OriGene Protein Over-expression Lysate for LRRK1   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for LRRK1   OriGene 3'-UTR Clone for LRRK1  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for LRRK1   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for LRRK1  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for LRRK1   OriGene Custom Protein Services for LRRK1  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat LRRK1
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing LRRK1
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LRRK1
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat LRRK1
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat LRRK1
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat LRRK1
     GenScript Custom Purified and Recombinant Proteins Services for LRRK1 GenScript cDNA clones with any tag delivered in your preferred vector for LRRK1
     GenScript Custom Assay Services for LRRK1 GenScript Custom Superior Antibodies Services for LRRK1
     GenScript Custom overexpressing Cell Line Services for LRRK1 CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in LRRK1 promoter
     Search Chromatin IP Primers for LRRK1
     RT2 qPCR Primer Assay in human, mouse, rat LRRK1
     Search GNC Networks for LRRK1
     SABiosciences Custom PCR Arrays for LRRK1
     Search Tocris compounds for LRRK1
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     LRRK1 antibodies
     LRRK1 proteins
     LRRK1 lysates
     Search for Antibodies for LRRK1 at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for LRRK1
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     LRRK1 Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for LRRK1
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LRRK1
     SwitchGear 3'UTR luciferase reporter plasmids for LRRK1
     Browse SwitchGear Promoter luciferase reporter plasmids for LRRK1
     ThermoFisher Antibodies for LRRK1
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat LRRK1
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      LRRK1 gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4