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Aliases for LRRC75A-AS1 Gene

Subcategory (RNA class) for LRRC75A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LRRC75A-AS1 Gene

  • LRRC75A Antisense RNA 1 2 3 4 5
  • FAM211A Antisense RNA 1 2 3 4
  • C17orf76 Antisense RNA 1 (Non-Protein Coding) 2 3
  • C17orf76-AS1 3 4
  • FAM211A-AS1 3 4
  • NCRNA00188 3 4
  • C17orf45 3 4
  • Putative Uncharacterized Protein FAM211A-AS1, Mitochondrial 4
  • Chromosome 17 Open Reading Frame 45 2
  • Non-Protein Coding RNA 188 2
  • C17orf76 Antisense RNA 1 2
  • TSAP19 3

External Ids for LRRC75A-AS1 Gene

Previous HGNC Symbols for LRRC75A-AS1 Gene

  • C17orf45
  • NCRNA00188
  • C17orf76-AS1
  • FAM211A-AS1

Previous GeneCards Identifiers for LRRC75A-AS1 Gene

  • GC17P016374

Summaries for LRRC75A-AS1 Gene

GeneCards Summary for LRRC75A-AS1 Gene

LRRC75A-AS1 (LRRC75A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LRRC75A-AS1 Gene

Genomics for LRRC75A-AS1 Gene

Regulatory Elements for LRRC75A-AS1 Gene

Enhancers for LRRC75A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G016462 1.7 FANTOM5 Ensembl ENCODE dbSUPER 24.6 +28.4 28425 8.9 FOXA2 PKNOX1 SIN3A INSM2 RAD21 RARA ZEB1 GATA4 ZNF366 GATA2 LRRC75A-AS1 LRRC75A PLD6 PIGL GC17M016479 PIR35161
GH17G016476 1.7 Ensembl ENCODE dbSUPER 19.9 +39.4 39448 2.8 CREB3L1 ZFP64 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 ZNF610 GLIS1 ENSG00000266538 LOC644422 LRRC75A-AS1 LRRC75A RPL13P12 ACTG1P24 LOC649873 CENPV GC17M016479 PIR35161
GH17G016406 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12 -31.1 -31112 2.2 HDGF ZFP64 SIN3A FEZF1 YBX1 ZNF207 ZNF548 SP3 JUNB REST ENSG00000266538 LOC649873 MPRIP-AS1 MEIS3P1 ENSG00000265519 UPF3AP1 FLCN LRRC75A-AS1 LRRC75A TRPV2
GH17G016438 1.4 ENCODE dbSUPER 13.5 +2.6 2597 6.8 HDGF PKNOX1 MLX CREB3L1 ARNT AGO1 ZFP64 ARID4B SIN3A DMAP1 LRRC75A-AS1 ENSG00000266538 RPL13P12 LRRC75A PIR35161 SNORD65
GH17G016516 1.5 FANTOM5 Ensembl ENCODE 12.4 +77.9 77926 1.3 FOXA2 ARNT SIN3A FEZF1 TCF12 GLIS2 ZNF766 GATA2 ZNF207 FOS LRRC75A LRRC75A-AS1 GC17P016523 GC17M016496
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LRRC75A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for LRRC75A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000091767 578 1601 HDGF PKNOX1 MLX ARNT AGO1 ZFP64 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for LRRC75A-AS1 Gene

Chromosome:
17
Start:
16,438,822 bp from pter
End:
16,478,678 bp from pter
Size:
39,857 bases
Orientation:
Plus strand

Genomic View for LRRC75A-AS1 Gene

Genes around LRRC75A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LRRC75A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LRRC75A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRRC75A-AS1 Gene

Proteins for LRRC75A-AS1 Gene

  • Protein details for LRRC75A-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N1F1-C1AS1_HUMAN
    Recommended name:
    Putative uncharacterized protein LRRC75A-AS1, mitochondrial
    Protein Accession:
    Q8N1F1

    Protein attributes for LRRC75A-AS1 Gene

    Size:
    130 amino acids
    Molecular mass:
    13824 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LRRC75A-AS1 Gene

Post-translational modifications for LRRC75A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LRRC75A-AS1 Gene

Domains & Families for LRRC75A-AS1 Gene

Protein Domains for LRRC75A-AS1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LRRC75A-AS1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LRRC75A-AS1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LRRC75A-AS1 Gene

Function for LRRC75A-AS1 Gene

Gene Ontology (GO) - Molecular Function for LRRC75A-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with LRRC75A-AS1: view
genes like me logo Genes that share phenotypes with LRRC75A-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LRRC75A-AS1 Gene

Localization for LRRC75A-AS1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LRRC75A-AS1 Gene

Mitochondrion.

Gene Ontology (GO) - Cellular Components for LRRC75A-AS1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with LRRC75A-AS1: view

No data available for Subcellular locations from COMPARTMENTS for LRRC75A-AS1 Gene

Pathways & Interactions for LRRC75A-AS1 Gene

SuperPathways for LRRC75A-AS1 Gene

No Data Available

Interacting Proteins for LRRC75A-AS1 Gene

Selected Interacting proteins: Q8N1F1-C1AS1_HUMAN for LRRC75A-AS1 Gene via MINT IID UniProtKB

Gene Ontology (GO) - Biological Process for LRRC75A-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LRRC75A-AS1 Gene

Transcripts for LRRC75A-AS1 Gene

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LRRC75A-AS1 Gene

No ASD Table

Relevant External Links for LRRC75A-AS1 Gene

GeneLoc Exon Structure for
LRRC75A-AS1
ECgene alternative splicing isoforms for
LRRC75A-AS1

Expression for LRRC75A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LRRC75A-AS1 Gene

Protein differential expression in normal tissues from HIPED for LRRC75A-AS1 Gene

This gene is overexpressed in Liver (31.5) and Heart (27.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for LRRC75A-AS1 Gene



Protein tissue co-expression partners for LRRC75A-AS1 Gene

genes like me logo Genes that share expression patterns with LRRC75A-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LRRC75A-AS1 Gene

Orthologs for LRRC75A-AS1 Gene

Evolution for LRRC75A-AS1 Gene

ENSEMBL:
Gene Tree for LRRC75A-AS1 (if available)
TreeFam:
Gene Tree for LRRC75A-AS1 (if available)

No data available for Orthologs for LRRC75A-AS1 Gene

Paralogs for LRRC75A-AS1 Gene

No data available for Paralogs for LRRC75A-AS1 Gene

Variants for LRRC75A-AS1 Gene

Sequence variations from dbSNP and Humsavar for LRRC75A-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000007923 -- 16,437,056(+) TGGCA(A/G)TGTCT downstream-variant-500B, upstream-variant-2KB
rs1000110017 -- 16,458,946(+) TGGCA(A/G)TGGAT intron-variant
rs1000128171 -- 16,458,670(+) ATGTT(A/G)GTCAG intron-variant
rs1000181144 -- 16,468,459(+) AGACA(C/T)AAAAG intron-variant
rs1000348007 -- 16,464,706(+) CTGGG(C/T)GGGGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LRRC75A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2715702 CNV deletion 23290073
esv3640102 CNV gain 21293372
esv3640103 CNV gain 21293372
nsv1063764 CNV loss 25217958
nsv1063941 CNV gain 25217958

Relevant External Links for LRRC75A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LRRC75A-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LRRC75A-AS1 Gene

Disorders for LRRC75A-AS1 Gene

Relevant External Links for LRRC75A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LRRC75A-AS1

No disorders were found for LRRC75A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LRRC75A-AS1 Gene

Publications for LRRC75A-AS1 Gene

  1. Long noncoding RNA expression profile in fibroblast-like synoviocytes from patients with rheumatoid arthritis. (PMID: 27716329) Zhang Y. … Li X.J. (Arthritis Res. Ther. 2016) 2 3 64
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  3. A directed protein interaction network for investigating intracellular signal transduction. (PMID: 21900206) Vinayagam A. … Wanker E.E. (Sci Signal 2011) 3 64
  4. Ubiquitin-mediated proteolysis of HuR by heat shock. (PMID: 19322201) Abdelmohsen K. … Gorospe M. (EMBO J. 2009) 3 64
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64

Products for LRRC75A-AS1 Gene

Sources for LRRC75A-AS1 Gene

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