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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

LRRC69 Gene

protein-coding   GIFtS: 37
GCID: GC08P092114

Leucine Rich Repeat Containing 69

  Search for LRRC69
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Leucine Rich Repeat Containing 691 2
Leucine-Rich Repeat-Containing Protein 692

External Ids:    HGNC: 343031   Entrez Gene: 1001307422   Ensembl: ENSG000002149547   UniProtKB: Q6ZNQ33   

Export aliases for LRRC69 gene to outside databases

Previous GC identifers: GC08U901021 GC08P092186 GC08P087326


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for LRRC69 Gene: 
LRRC69 (leucine rich repeat containing 69) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000008.10  NT_008046.16  NC_018919.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the LRRC69 gene promoter:
         E2F-3a   E2F-4   E2F-5   E2F-2   CUTL1   HNF-3beta   FOXL1   E2F-1   E2F   FOXC1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for LRRC69

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LRRC69


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8q21.3   Ensembl cytogenetic band:  8q21.3   HGNC cytogenetic band: 8q21.3

LRRC69 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
LRRC69 gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08P092114:  view genomic region     (about GC identifiers)

Start:
92,114,060 bp from pter      End:
92,231,464 bp from pter
Size:
117,405 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: LRC69_HUMAN, Q6ZNQ3 (See protein sequence)
Recommended Name: Leucine-rich repeat-containing protein 69  
Size: 347 amino acids; 39592 Da
Alternative splicing: 2 isoforms:  Q6ZNQ3-1   Q6ZNQ3-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for LRRC69: NX_Q6ZNQ3

Explore proteomics data for LRRC69 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q6ZNQ3

  • LRRC69 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    LRRC69 Protein Expression
    REFSEQ proteins: NP_001123362.1  
    ENSEMBL proteins: 
     ENSP00000428285   ENSP00000428537   ENSP00000343221   ENSP00000400803  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    2 InterPro protein domains:
     IPR001611 Leu-rich_rpt
     IPR025875 Leu-rich_rpt_4

    Graphical View of Domain Structure for InterPro Entry Q6ZNQ3

    ProtoNet protein and cluster: Q6ZNQ3

    UniProtKB/Swiss-Prot: LRC69_HUMAN, Q6ZNQ3
    Similarity: Belongs to the LRRC69 family
    Similarity: Contains 8 LRR (leucine-rich) repeats


    LRRC69 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    LRRC69 for ontologies           About GeneDecksing


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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for LRRC69

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for LRRC69 (ENSP000004008034) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for LRRC69 (LRC69)

    Search CenterWatch for drugs/clinical trials and news about LRRC69 / LRC69

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    About This Section

    REFSEQ mRNAs for LRRC69 gene: 
    NM_001129890.1  

    Unigene Cluster for LRRC69:

    Leucine rich repeat containing 69
    Hs.733070  [show with all ESTs]
    Unigene Representative Sequence: AK097393
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000518304 ENST00000520099(uc010mal.1 uc003yev.1 uc003yew.1)
    ENST00000343709 ENST00000448384 ENST00000522144 ENST00000518487 ENST00000521519

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    Additional mRNA sequence: 

    AK097393.1 AK130865.1 

    6 DOTS entries:

    DT.109395  DT.95207092  DT.101976010  DT.121472403  DT.75126522  DT.100735821 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    LRRC69 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCTGTTCTCT
    LRRC69 Expression
    About this image


    See LRRC69 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for LRRC69

    SOURCE GeneReport for Unigene cluster: Hs.733070
        SABiosciences Custom PCR Arrays for LRRC69
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LRRC69

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for LRRC69 gene from 4/11 species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Lrrc691 , 5 leucine rich repeat containing 691, 5 75.72(n)1
    67.05(a)1
      4 (6.30 cM)5
    733141  NM_028499.21  NP_082775.11 
     146236205 
    zebrafish
    (Danio rerio)
    Actinopterygii LRRC696
    leucine rich repeat containing 69
    37(a)
    1 ↔ 1
    19(35193650-35200070)
    fruit fly
    (Drosophila melanogaster)
    Insecta Lrr476
    Leucine-rich repeat 47
    14(a)
    1 → many
    2L(10517335-10519269)
    worm
    (Caenorhabditis elegans)
    Secernentea lrr-16
    Protein LRR-1
    12(a)
    1 → many
    II(5034030-5036439)


    ENSEMBL Gene Tree for LRRC69 (if available)
    TreeFam Gene Tree for LRRC69 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/2152 SNPs in LRRC69 are shown (see all 2152)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1511577001,2
    --92113238(+) TGCATC/TAGCAT 1 -- us2k10--------
    rs1829926171,2
    --92113540(+) AACCCC/TTATGT 1 -- us2k10--------
    rs1888233831,2
    --92113613(+) ACCCAC/GTTTCC 1 -- us2k10--------
    rs1920982361,2
    --92113635(+) TTTTTA/TAAAAA 1 -- us2k10--------
    rs1835038371,2
    --92113649(+) CAAGAC/TATCAT 1 -- us2k10--------
    rs1879911181,2
    --92113651(+) AGATAC/TCATTT 1 -- us2k10--------
    rs1924141741,2
    --92113871(+) ACATCC/GTAACA 1 -- us2k10--------
    rs1845207921,2
    --92113884(+) TTTCCC/TTCCTT 1 -- us2k10--------
    rs1889934331,2
    --92113910(+) CATTTA/GTTGGT 1 -- us2k10--------
    rs1402092081,2
    --92114031(+) AAATGA/GTAGTT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for LRRC69 (92114060 - 92231464 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10/19 variations for LRRC69 (see all 19):    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2195824CNV Deletion18987734
    esv2670300CNV Deletion23128226
    esv2523005CNV Deletion19546169
    esv2737291CNV Deletion23290073
    esv2656822CNV Deletion23128226
    esv995698CNV Deletion20482838
    nsv398405CNV Insertion16902084
    nsv6301CNV Insertion18451855
    esv272980CNV Insertion20981092
    esv1005988CNV Insertion20482838


    Human Gene Mutation Database (HGMD): LRRC69
    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    LRRC69 for disorders           About MalaCards

    LRRC69 for disorders           About GeneDecksing

    Genetic Association Database (GAD): LRRC69

    Export disorders for LRRC69 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for LRRC69 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with LRRC69)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    2. A data set of human endogenous protein ubiquitination sites. (PubMed id 20972266)1 Shi Y....Qin J. (2011)
    3. DNA sequence and analysis of human chromosome 8. (PubMed id 16421571)2 Nusbaum C....Lander E.S. (2006)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 100130742 HGNC: 34303 Ensembl:ENSG00000214954 euGenes: HUgn100130742 ECgene: LRRC69
    H-InvDB: LRRC69

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for LRRC69 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for LRRC69 gene:
    Search GeneIP for patents involving LRRC69

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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     inGenious Targeting Laboratory - Custom generated mouse model solutions for LRRC69
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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