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LRRC37A3 Gene

protein-coding   GIFtS: 43
GCID: GC17M062850

Leucine Rich Repeat Containing 37, Member A3

  Search for LRRC37A3
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Leucine Rich Repeat Containing 37, Member A31 2
LRRC372
LRRC37A2
Leucine-Rich Repeat-Containing Protein 37A32
KIAA05633

External Ids:    HGNC: 324271   Entrez Gene: 3748192   Ensembl: ENSG000001768097   UniProtKB: O603093   

Export aliases for LRRC37A3 gene to outside databases

Previous GC identifers: GC17M060281 GC17M058309


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for LRRC37A3 Gene:
LRRC37A3 (leucine rich repeat containing 37, member A3) is a protein-coding gene. An important paralog of this gene is LRRC37A2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000017.11  NC_018928.2  NT_010783.16  
Regulatory elements:
   Regulatory transcription factor binding sites in the LRRC37A3 gene promoter:
         GR   Pax-5   Lmo2   N-Myc   Max   c-Rel   GR-alpha   MRF-2   c-Myc   ATF6   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for LRRC37A3

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat LRRC37A3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q24.1   Ensembl cytogenetic band:  17q24.1   HGNC cytogenetic band: 17q24.1

LRRC37A3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
LRRC37A3 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M062850:  view genomic region     (about GC identifiers)

Start:
62,850,430 bp from pter      End:
62,915,598 bp from pter
Size:
65,169 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: L37A3_HUMAN, O60309 (See protein sequence)
Recommended Name: Leucine-rich repeat-containing protein 37A3 precursor  
Size: 1634 amino acids; 180621 Da
Sequence caution: Sequence=BAA25489.3; Type=Erroneous initiation; Sequence=BAC03710.1; Type=Erroneous initiation;
Secondary accessions: Q49A01 Q49A80 Q8NB33

Explore the universe of human proteins at neXtProt for LRRC37A3: NX_O60309

Explore proteomics data for LRRC37A3 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn296, Asn1079

  • See LRRC37A3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_955372.2  
    ENSEMBL proteins: 
     ENSP00000344298   ENSP00000383674   ENSP00000335617   ENSP00000464535   ENSP00000462872  
     ENSP00000463346   ENSP00000462864   ENSP00000463186   ENSP00000325713  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    3 InterPro protein domains:
     IPR001611 Leu-rich_rpt
     IPR003591 Leu-rich_rpt_typical-subtyp
     IPR015753 LRRC37A/B

    Graphical View of Domain Structure for InterPro Entry O60309

    ProtoNet protein and cluster: O60309

    UniProtKB/Swiss-Prot: L37A3_HUMAN, O60309
    Similarity: Belongs to the LRRC37A family
    Similarity: Contains 12 LRR (leucine-rich) repeats


    LRRC37A3 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    LRRC37A3 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for LRRC37A3:
     Synthetic lethal with imatinib 

    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    L37A3_HUMAN, O60309: Membrane; Single-pass type I membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    plasma membrane3
    cytosol1
    extracellular1
    golgi apparatus1
    mitochondrion1
    nucleus1
    peroxisome1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral component of membrane IEA--

    LRRC37A3 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for LRRC37A3
    Interactions:

        Search GeneGlobe Interaction Network for LRRC37A3

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for LRRC37A3 (ENSP000003257134) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CAB39ENSP000002584184STRING: ENSP00000258418
    CAB39LENSP000002616694STRING: ENSP00000261669
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for LRRC37A3 (L37A3)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for LRRC37A3 gene: 
    NM_199340.2  

    Unigene Cluster for LRRC37A3:

    Leucine rich repeat containing 37, member A3
    Hs.551962  [show with all ESTs]
    Unigene Representative Sequence: NM_199340
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000339474(uc010wqg.1 uc010dek.1) ENST00000400877(uc010wqf.1)
    ENST00000334962(uc002jex.1) ENST00000584306(uc002jey.2) ENST00000583510
    ENST00000579305 ENST00000581368 ENST00000584788 ENST00000580464 ENST00000580439
    ENST00000577487 ENST00000319651
    miRNA
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      QuantiFast Probe-based Assays in human, mouse, rat LRRC37A3

    Additional mRNA sequence: 

    AB011135.2 AK294371.1 AK299714.1 AK308554.1 AK315945.1 BC043145.1 BC048966.1 BC113643.1 
    BC117274.1 JQ358760.1 

    13 DOTS entries:

    DT.101982730  DT.91761796  DT.120973285  DT.99981355  DT.102843966  DT.120973260  DT.100748724  DT.100775706 
    DT.101986365  DT.120973253  DT.86845649  DT.92464036  DT.97838754 

    Selected AceView cDNA sequences (see all 81):

    BX119600 BM703627 BM696096 BM683429 AI951999 BU730078 BM718370 CK430933 
    AI693102 AI470443 AA404468 AX747101 W85865 AA758643 BE712999 BG389164 
    BF525420 AK091625 BE815266 AB011135 BI560889 BV197736 BE712960 CB269571 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    LRRC37A3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGCAAGTGAC
    LRRC37A3 Expression
    About this image

    LRRC37A3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    LRRC37A3 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.551962
        Custom PCR Arrays for LRRC37A3
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LRRC37A3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for LRRC37A3 gene from Selected species (see all 8)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Lrrc37a5 leucine rich repeat containing 37A   --   11 (67.27 cM) 103451955 
    chicken
    (Gallus gallus)
    Aves --
    Uncharacterized protein
    44(a)
    1 → many
    27(1606631-1610759)
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    25(a)
    1 → many
    6(63350780-63391711)


    ENSEMBL Gene Tree for LRRC37A3 (if available)
    TreeFam Gene Tree for LRRC37A3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for LRRC37A3 gene
    LRRC37A21 2  LRRC37A1 2  LRRC37B2  
    17 SIMAP similar genes for LRRC37A3 using alignment to 9 protein entries:     L37A3_HUMAN (see all proteins):
    DNAPTP3    LRRC37A    LRRC37A2    FAM138C    OK/SW-cl.41    ZCCHC10
    KIAA1651    CCT3    LRRC37A5P    BNC2    C14orf178    APCDD1
    PLA2G15    PPP2R1A    FLJ20555    FP6651    LRRC37B

    LRRC37A3 for paralogs           About GeneDecksing


    Selected Pseudogenes.org Pseudogenes for LRRC37A3 (see all 17)
    PGOHUM00000242899 PGOHUM00000237008 PGOHUM00000262949 PGOHUM00000262950 PGOHUM00000237040


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for LRRC37A3 (see all 567)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1435336501,2
    Cuntested162856055(+) TTTTCC/TATAAA 2 I M mis11Minor allele frequency- T:0.00NA 4506
    rs1394209971,2
    --62850062(+) TCAGCC/TGGGGA 1 -- ds50010--------
    rs1899183831,2
    --62850138(+) CAGTCC/TCTCAG 1 -- ds50010--------
    rs1496470151,2
    C--62850151(+) GGCAGC/TCTTGG 1 -- ds50010--------
    rs1810619541,2
    --62850180(+) CATTCC/TTCTTG 1 -- ds50010--------
    rs285805451,2
    C,F,H--62850433(+) GGCAGG/AAGTTC 1 -- ds500111Minor allele frequency- A:0.16NS NA CSA 1233
    rs1133662811,2
    F--62850584(+) AGGAAC/TGATGG 1 -- ut311Minor allele frequency- T:0.50CSA 2
    rs1858870541,2
    --62850589(+) CGATGG/TCCCTG 1 -- ut310--------
    rs1891255071,2
    --62850633(+) GGGCCA/GCTGGC 1 -- ut310--------
    rs2005279931,2
    --62850681(+) TGTATC/TTTTGC 1 -- ut310--------

    HapMap Linkage Disequilibrium report for LRRC37A3 (62850430 - 62915598 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for LRRC37A3:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv471504CNV Duplication19718026
    dgv44n68CNV Loss17160897
    dgv45n68CNV Loss17160897
    nsv908688CNV Loss21882294
    nsv469875CNV Loss16826518
    nsv908686CNV Gain21882294
    esv24547CNV Gain19812545
    nsv9585CNV Gain+Loss18304495

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for LRRC37A3 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with LRRC37A3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    3. Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9628581)1, 2 Nagase T....Ohara O. (DNA Res. 1998)
    4. Evolutionary dynamism of the primate LRRC37 gene family. (PubMed id 23064749)1 Giannuzzi G....Eichler E.E. (Genome Res. 2013)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 374819 HGNC: 32427 AceView: FLJ34306 Ensembl:ENSG00000176809 euGenes: HUgn374819
    ECgene: LRRC37A3 H-InvDB: LRRC37A3

    (According to HUGE)
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    HUGE: KIAA0563

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for LRRC37A3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for LRRC37A3 gene:
    Search GeneIP for patents involving LRRC37A3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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