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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

LRRC37A3 Gene

protein-coding   GIFtS: 42
GCID: GC17M062850

Leucine Rich Repeat Containing 37, Member A3

  Search for LRRC37A3
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Leucine Rich Repeat Containing 37, Member A31 2
LRRC37A2
Leucine-Rich Repeat-Containing Protein 37A32
KIAA05633

External Ids:    HGNC: 324271   Entrez Gene: 3748192   Ensembl: ENSG000001768097   UniProtKB: O603093   

Export aliases for LRRC37A3 gene to outside databases

Previous GC identifers: GC17M060281 GC17M058309


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for LRRC37A3 Gene: 
LRRC37A3 (leucine rich repeat containing 37, member A3) is a protein-coding gene. An important paralog of this gene is LRRC37A2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000017.10  NT_010783.15  NC_018928.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the LRRC37A3 gene promoter:
         GR   Pax-5   Lmo2   N-Myc   Max   c-Rel   GR-alpha   MRF-2   c-Myc   ATF6   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for LRRC37A3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LRRC37A3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q24.1   Ensembl cytogenetic band:  17q24.1   HGNC cytogenetic band: 17q24.1

LRRC37A3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
LRRC37A3 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M062850:  view genomic region     (about GC identifiers)

Start:
62,850,430 bp from pter      End:
62,915,598 bp from pter
Size:
65,169 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: L37A3_HUMAN, O60309 (See protein sequence)
Recommended Name: Leucine-rich repeat-containing protein 37A3 precursor  
Size: 1634 amino acids; 180621 Da
Subcellular location: Membrane; Single-pass type I membrane protein (Potential)
Sequence caution: Sequence=BAA25489.3; Type=Erroneous initiation; Sequence=BAC03710.1; Type=Erroneous initiation;
Secondary accessions: Q49A01 Q49A80 Q8NB33

Explore the universe of human proteins at neXtProt for LRRC37A3: NX_O60309

Explore proteomics data for LRRC37A3 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_O60309

  • LRRC37A3 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    LRRC37A3 Protein Expression
    REFSEQ proteins: NP_955372.2  
    ENSEMBL proteins: 
     ENSP00000344298   ENSP00000383674   ENSP00000335617   ENSP00000464535   ENSP00000462872  
     ENSP00000463346   ENSP00000462864   ENSP00000463186   ENSP00000325713  

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    Cloud-Clone Corp. Proteins for LRRC37A3 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral to membrane IEA--

    LRRC37A3 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    3 InterPro protein domains:
     IPR001611 Leu-rich_rpt
     IPR003591 Leu-rich_rpt_typical-subtyp
     IPR015753 PRP

    Graphical View of Domain Structure for InterPro Entry O60309

    ProtoNet protein and cluster: O60309

    UniProtKB/Swiss-Prot: L37A3_HUMAN, O60309
    Similarity: Belongs to the LRRC37A family
    Similarity: Contains 12 LRR (leucine-rich) repeats


    LRRC37A3 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    LRRC37A3 for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for LRRC37A3:
     Synthetic lethal with imatinib 

    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for LRRC37A3

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for LRRC37A3 (L37A3)

    Search CenterWatch for drugs/clinical trials and news about LRRC37A3 / L37A3

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for LRRC37A3 gene: 
    NM_199340.2  

    Unigene Cluster for LRRC37A3:

    Leucine rich repeat containing 37, member A3
    Hs.551962  [show with all ESTs]
    Unigene Representative Sequence: NM_199340
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000339474(uc010wqg.1 uc010dek.1) ENST00000400877(uc010wqf.1)
    ENST00000334962(uc002jex.1) ENST00000584306(uc002jey.2) ENST00000583510
    ENST00000579305 ENST00000581368 ENST00000584788 ENST00000580464 ENST00000580439
    ENST00000577487 ENST00000319651
    miRNA
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    Inhib. RNA
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat LRRC37A3
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat LRRC37A3

    Additional mRNA sequence: 

    AB011135.2 AK294371.1 AK299714.1 AK308554.1 AK315945.1 BC043145.1 BC048966.1 BC113643.1 
    BC117274.1 JQ358760.1 

    13 DOTS entries:

    DT.101982730  DT.91761796  DT.120973285  DT.99981355  DT.102843966  DT.120973260  DT.100748724  DT.100775706 
    DT.101986365  DT.120973253  DT.86845649  DT.92464036  DT.97838754 

    24/81 AceView cDNA sequences (see all 81):

    BU730078 BM696096 CK430933 BM703627 AI951999 BM718370 BM683429 BX119600 
    AI693102 AA404468 BE712960 BF115100 AA329925 AK091625 BX643951 AA758643 
    BX470537 AA620313 BF525420 BG389164 AA345007 BV197736 AB011135 AI741023 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    LRRC37A3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGCAAGTGAC
    LRRC37A3 Expression
    About this image


    See LRRC37A3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for LRRC37A3

    SOURCE GeneReport for Unigene cluster: Hs.551962
        SABiosciences Custom PCR Arrays for LRRC37A3
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LRRC37A3

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for LRRC37A3 gene from 3/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Lrrc37a1 , 5 leucine rich repeat containing 37A1, 5 62.71(n)1
    46.77(a)1
      11 (67.27 cM)5
    2379541  XM_137868.101  XP_137868.101 
     1034519555 
    chicken
    (Gallus gallus)
    Aves --
    Uncharacterized protein
    46(a)
    1 → many
    27(1606631-1610759)
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    25(a)
    possible ortholog
    6(63350780-63391711)


    ENSEMBL Gene Tree for LRRC37A3 (if available)
    TreeFam Gene Tree for LRRC37A3 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for LRRC37A3 gene
    LRRC37A21 2  LRRC37A1 2  LRRC37B2  
    18/21 SIMAP similar genes for LRRC37A3 using alignment to 9 protein entries:     L37A3_HUMAN (see all proteins) (see all similar genes):
    DNAPTP3    LRRC37A    LRRC37A2    FAM138A    FAM138B    FAM138C
    FAM138F    OK/SW-cl.41    FAM138D    ZCCHC10    KIAA1651    CCT3
    LRRC37A5P    BNC2    C14orf178    APCDD1    PLA2G15    PPP2R1A

    LRRC37A3 for paralogs           About GeneDecksing


    5/17 Pseudogenes.org Pseudogenes for LRRC37A3 (see all 17)
    PGOHUM00000242899 PGOHUM00000237008 PGOHUM00000262949 PGOHUM00000262950 PGOHUM00000237040


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/567 SNPs in LRRC37A3 are shown (see all 567)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1435336501,2
    Cuntested162856055(+) TTTTCC/TATAAA 2 I M mis11Minor allele frequency- T:0.00NA 4506
    VAR_0510884
    ----see VAR_0510882 K E mis40--------
    rs1394209971,2
    --62850062(+) TCAGCC/TGGGGA 1 -- ds50010--------
    rs1899183831,2
    --62850138(+) CAGTCC/TCTCAG 1 -- ds50010--------
    rs1496470151,2
    C--62850151(+) GGCAGC/TCTTGG 1 -- ds50010--------
    rs1810619541,2
    --62850180(+) CATTCC/TTCTTG 1 -- ds50010--------
    rs285805451,2
    C,F,H--62850433(+) GGCAGG/AAGTTC 1 -- ds500111Minor allele frequency- A:0.16NS NA CSA 1233
    rs1133662811,2
    F--62850584(+) AGGAAC/TGATGG 1 -- ut311Minor allele frequency- T:0.50CSA 2
    rs1858870541,2
    --62850589(+) CGATGG/TCCCTG 1 -- ut310--------
    rs1891255071,2
    --62850633(+) GGGCCA/GCTGGC 1 -- ut310--------

    HapMap Linkage Disequilibrium report for LRRC37A3 (62850430 - 62915598 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for LRRC37A3:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv471504CNV Duplication19718026
    dgv44n68CNV Loss17160897
    dgv45n68CNV Loss17160897
    nsv908688CNV Loss21882294
    nsv469875CNV Loss16826518
    nsv908686CNV Gain21882294
    esv24547CNV Gain19812545
    nsv9585CNV Gain+Loss18304495

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for LRRC37A3 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with LRRC37A3)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro. (PubMed id 9628581)1, 2 Nagase T....Ohara O. (1998)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 374819 HGNC: 32427 AceView: FLJ34306 Ensembl:ENSG00000176809 euGenes: HUgn374819
    ECgene: LRRC37A3 H-InvDB: LRRC37A3

    (According to HUGE)
    About This Section
    HUGE: KIAA0563

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for LRRC37A3 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for LRRC37A3 gene:
    Search GeneIP for patents involving LRRC37A3

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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