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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

LRRC33 Gene

protein-coding GIFtS: 41
GCID: GC03P196366

leucine rich repeat containing 33

Search for LRRC33
in

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Leucine Rich Repeat Containing 33¹ ²
ELLP3030¹ ²
GARPL1¹ ²
UNQ3030¹ ²
MGC50789¹
Leucine-Rich Repeat-Containing Protein 33²

External Ids:	HGNC: 24613¹	Entrez Gene: 375387²	Ensembl: ENSG00000174004⁷	UniProtKB: Q86YC3³

Export aliases for LRRC33 gene to outside databases

Previous GC identifers: GC03P197855 GC03P193663

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000003.11 NC_018914.1 NT_029928.13

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the LRRC33 gene promoter:
RFX1 Pax-6 NF-YA NF-YB CBF-B CBF-A c-Myb CP1A NF-Y CBF(2)
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: LRRC33 promoter sequence

Search SABiosciences Chromatin IP Primers for LRRC33

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LRRC33

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q29 Ensembl cytogenetic band: 3q29 HGNC cytogenetic band: 3q29

LRRC33 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
LRRC33 gene location

GeneLoc information about chromosome 3 GeneLoc Exon Structure

GeneLoc location for GC03P196366: view genomic region (about GC identifiers)

Start:	196,366,557 bp from pter	End:	196,388,875 bp from pter
Size:	22,319 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: LRC33_HUMAN, Q86YC3 (See protein sequence)

Recommended Name: Leucine-rich repeat-containing protein 33 precursor

Size: 692 amino acids; 76366 Da

Subcellular location: Membrane; Single-pass type I membrane protein (Potential)

Explore the universe of human proteins at neXtProt for LRRC33: NX_Q86YC3

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q86YC3

LRRC33 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_940967.1

ENSEMBL proteins:

ENSP00000328625

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	Uscn Proteins for LRRC33

Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0016021	integral to membrane	IEA	--

LRRC33 for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

LRRC33 for domains About GeneDecksing

2 InterPro domains/families:

IPR001611 Leu-rich_rpt

IPR003591 Leu-rich_rpt_typical-subtyp

Graphical View of Domain Structure for InterPro Entry Q86YC3

ProtoNet protein and cluster: Q86YC3

UniProtKB/Swiss-Prot: LRC33_HUMAN, Q86YC3

Similarity: Contains 21 LRR (leucine-rich) repeats

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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4 GenomeRNAi human phenotypes for LRRC33:

Decreased NANOG protein expres

Decreased OCT4 protein express

Decreased POU5F1-GFP protein e

Decreased cell number and incr

Animal Models:
Mouse knock-out Lrrc33^tm1Lex for LRRC33
1 MGI phenotypic allele

for Lrrc33 (no phenotypes)

LRRC33 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for LRRC33

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for LRRC33
Search CenterWatch for drugs/clinical trials and news about LRRC33 / LRC33

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for LRRC33 gene:

NM_198565.1

Unigene Cluster for LRRC33:

Leucine rich repeat containing 33

Hs.702186 [show with all ESTs]

Unigene Representative Sequence: BC034704

2 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000328557(uc003fwv.3) ENST00000461791

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Additional cDNA sequence:

AY358322.1 BC034704.1 BC044233.1

4 DOTS entries:

DT.75155329 DT.101964207 DT.100778209 DT.97818750

24/122 AceView cDNA sequences (see all 122):

BU159626 BQ130655 AL133913 BM694867 AW299992 BE673281 CR619710 BM694954

BP432100 BI760115 AA448292 BU732488 AA132190 BG105919 AK000529 AW193851

BM564927 BU731672 AI810352 BM709023 BE326876 BX400560 BU731745 AA132089

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

LRRC33 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GTCACCTGCA

About this image

LRRC33 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 3 LifeMap Cells

Name

Category

PureStem™ endothelial progenitor 30-MV2-12 (Embryonic Progenitor Cell)

Blood, Endothelium

PureStem™ endothelial Progenitor 30-SM2-3 (Embryonic Progenitor Cell)

Blood, Endothelium

PureStem™ endothelial progenitor 30-MV2-14 (Embryonic Progenitor Cell)

Endothelium

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See LRRC33 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for LRRC33

SOURCE GeneReport for Unigene cluster: Hs.702186

SABiosciences Custom PCR Arrays for LRRC33

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of animals.

Orthologs for LRRC33 gene from 5/17 species (see all 17) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
chicken (Gallus gallus)	Aves	LRRC33¹	leucine rich repeat containing 33	63.35(n) 54.68(a)		424857 XM_422668.2 XP_422668.1
lizard (Anolis carolinensis)	Reptilia	LRRC33⁶	--	53(a)	1 ↔ 1	3(30780955-30782895)
zebrafish (Danio rerio)	Actinopterygii	lrrc33¹	leucine rich repeat containing 33	47.83(n) 39.25(a)		445318 NM_001003775.1 NP_001003775.1
fruit fly (Drosophila melanogaster)	Insecta	CG5195⁶ CG7896⁶ (see all 3)	--	8(a) 8(a) (see all 3)	possible ortholog possible ortholog (see all 3)	3L(20447790-20457962) 3R(25809174-25816514)
worm (Caenorhabditis elegans)	Secernentea	egg-6⁶ tol-1⁶ (see all 4)	TOLl (Drosophila) family member (tol-1) (see all 4)	9(a) 7(a) (see all 4)	possible ortholog many ↔ many (see all 4)	I(8676657-8681328) I(444002-461610)

ENSEMBL Gene Tree for LRRC33 (if available)
TreeFam Gene Tree for LRRC33 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for LRRC33 gene

CD180² ENSG00000173366² TLR7² TLR1² TLR9² TLR5² TLR10² TLR4²

TLR8² TLR6² LRRC32² TLR3² TLR2²

1 SIMAP similar gene for LRRC33 using alignment to 1 protein entry: LRC33_HUMAN:

LRRC32

LRRC33 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 3 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs35819415^1,2		--	193663222(+)	`GTCCTC/AGACAA`	1	--	us2k¹		3		CSA WA NA	240
rs73892913^1,2	C,	--	193663446(+)	`GCAAGG/AGGCCC`	1	--	us2k¹		2		WA	120
rs76692366^1,2	F,	--	193663951(+)	`CAGCTC/GAGGGC`	1	--	us2k¹		1		EA	120
rs11718034^1,2	C,F,H,	--	193664101(+)	`ACCACG/AAGGGC`	1	--	us2k¹		1		NA	4
rs34214036^1,2	C,F,	--	193664576(+)	`GTAGCC/TCTCGT`	1	--	nc-transcript-variant		5		NA EA	246
rs74995688^1,2	F,	--	193664828(+)	`CGGAGG/TCTTCT`	1	--	nc-transcript-variant		1		NA	120
rs78734466^1,2	C,F,	--	193664951(+)	`CTGTGG/AATGCT`	1	--	nc-transcript-variant		1		NA	120
rs12152278^1,2		--	193665164(+)	`AAAAAA/TATATA`	1	--	ds500¹		0	--	--	--	--
rs9824884^1,2	C,F,	--	193665360(+)	`tagacA/Tcagga`	1	--	ds500¹		4		NA WA	242
rs79710125^1,2	C,	--	193665445(+)	`TGGGAG/ATGTGG`	1	--	ds500¹		2		NA	122

HapMap Linkage Disequilibrium report for LRRC33 (196366557 - 196388875 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 3 variations for LRRC33
1 CNV: 4368
2 Inversions: 37243 0568

SABiosciences Cancer Mutation PCR Assays

QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing LRRC33

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for LRRC33 gene integrated from 9 sources:
(articles sorted by number of sources associating them with LRRC33)

Utopia: connect your pdf to the dynamic
world of online information

The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)^{1, 2, 3} Clark H.F.... Gray A.M. (2003)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)¹ Udeshi N.D....Carr S.A. (2012)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 375387	HGNC: 24613	AceView: FLJ20522andUNQ3030	Ensembl:ENSG00000174004	euGenes: HUgn375387
ECgene: LRRC33	H-InvDB: LRRC33

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for LRRC33	Pharmacogenomics, SNPs, Pathways

Intellectual Property for LRRC33 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for LRRC33 gene:
Search GeneIP for patents involving LRRC33

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section


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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LRRC33

	SwitchGear 3'UTR luciferase reporter plasmids for LRRC33
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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat LRRC33

GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

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Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes LRRC33 gene at Home site.

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LRRC33 Gene

leucine rich repeat containing 33

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Export list of displayed genes

LRRC33 Gene

leucine rich repeat containing 33

Aliasesfor LRRC33 gene

Summariesfor LRRC33 gene

Genomic Viewsfor LRRC33 gene

Proteinsfor LRRC33 gene

Protein Domains /Familiesfor LRRC33 gene

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Transcriptsfor LRRC33 gene

Expression for LRRC33 gene

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Genomic Variantsfor LRRC33 gene

Disorders / Diseasesfor LRRC33 gene

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External Searches for LRRC33 gene

Genome Databases showing LRRC33 gene

Other Databases showing LRRC33 gene

Specialized Databases showing LRRC33 gene

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Aliases
for LRRC33 gene

Summaries
for LRRC33 gene

Genomic Views
for LRRC33 gene

Proteins
for LRRC33 gene

Protein Domains /
Families
for LRRC33 gene

Function
for LRRC33 gene

Pathways & Interactions
for LRRC33 gene

Drugs & Compounds
for LRRC33 gene

Transcripts
for LRRC33 gene

Expression
for LRRC33 gene

Orthologs
for LRRC33 gene

Paralogs
for LRRC33 gene

Genomic Variants
for LRRC33 gene

Disorders / Diseases
for LRRC33 gene

Publications
for LRRC33 gene

Intellectual Property
for LRRC33 gene

Products
for LRRC33 gene