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LRRC25 Gene

protein-coding   GIFtS: 45
GCID: GC19M018501

Leucine Rich Repeat Containing 25

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Leucine Rich Repeat Containing 251 2
MAPA2 3 5
Monocyte And Plasmacytoid-Activated Protein2 3
Leucine-Rich Repeat-Containing Protein 252
Monocyte And Plasmacytoid Activated Molecule2

External Ids:    HGNC: 298061   Entrez Gene: 1263642   Ensembl: ENSG000001754897   OMIM: 6075185   UniProtKB: Q8N3863   

Export aliases for LRRC25 gene to outside databases

Previous GC identifers: GC19M018363 GC19M018364 GC19M018065


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for LRRC25 Gene:
LRRC25 (leucine rich repeat containing 25) is a protein-coding gene.

UniProtKB/Swiss-Prot: LRC25_HUMAN, Q8N386
Function: May be involved in the activation of cells of innate and acquired immunity




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NT_011295.12  NC_018930.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the LRRC25 gene promoter:
         Max1   USF1   MyoD   Arnt   E47   FOXL1   USF-1   FOXO1a   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidLRRC25 promoter sequence
   Search Chromatin IP Primers for LRRC25

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat LRRC25


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.11   Ensembl cytogenetic band:  19p13.11   HGNC cytogenetic band: 19p13.11

LRRC25 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
LRRC25 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M018501:  view genomic region     (about GC identifiers)

Start:
18,501,954 bp from pter      End:
18,508,427 bp from pter
Size:
6,474 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: LRC25_HUMAN, Q8N386 (See protein sequence)
Recommended Name: Leucine-rich repeat-containing protein 25 precursor  
Size: 305 amino acids; 33179 Da
Secondary accessions: Q6IQ00 Q8N9A5

Explore the universe of human proteins at neXtProt for LRRC25: NX_Q8N386

Explore proteomics data for LRRC25 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Asn44, Asn55, Asn130, Asn148
  • Modification sites at PhosphoSitePlus

  • See LRRC25 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_660299.2  
    ENSEMBL proteins: 
     ENSP00000340983   ENSP00000472290  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR025875 Leu-rich_rpt_4

    Graphical View of Domain Structure for InterPro Entry Q8N386

    ProtoNet protein and cluster: Q8N386

    1 Blocks protein domain: IPB001611 Leucine-rich repeat signature

    UniProtKB/Swiss-Prot: LRC25_HUMAN, Q8N386
    Similarity: Contains 3 LRR (leucine-rich) repeats


    Find genes that share domains with LRRC25           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: LRC25_HUMAN, Q8N386
    Function: May be involved in the activation of cells of innate and acquired immunity
    Induction: Down-regulated in CD40-activated monocyte-derived dendritic cells

    Animal Models:

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    LRC25_HUMAN, Q8N386: Membrane; Single-pass type I membrane protein (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    extracellular3
    plasma membrane3
    chloroplast1
    cytosol1
    lysosome1
    nucleus1

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with LRRC25           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for LRRC25
    Interactions:

        Search GeneGlobe Interaction Network for LRRC25

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for LRRC25 (ENSP000003409834) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ACDENSP000003774964STRING: ENSP00000377496
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for LRRC25 (LRC25)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for LRRC25 gene: 
    NM_145256.2  

    Unigene Cluster for LRRC25:

    Leucine rich repeat containing 25
    Hs.332156  [show with all ESTs]
    Unigene Representative Sequence: NM_145256
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000339007(uc002niw.3 uc002nix.3) ENST00000595840
    miRNA
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    hsa-miR-877*
    SwitchGear 3'UTR luciferase reporter plasmidLRRC25 3' UTR sequence
    Inhib. RNA
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      QuantiTect SYBR Green Assays in human, mouse, rat LRRC25
      QuantiFast Probe-based Assays in human, mouse, rat LRRC25

    Additional mRNA sequence: 

    AJ422148.1 AK095435.1 AY358151.1 BC025744.1 BC033825.1 BC053659.1 BC071640.1 BC093842.1 

    4 DOTS entries:

    DT.95368204  DT.100020044  DT.101978444  DT.102844371 

    Selected AceView cDNA sequences (see all 35):

    BI910095 BI908597 NM_145256 CR593873 BC053659 BI768762 BX369378 AK095435 
    BM923042 BC071640 BX336794 AY358151 BC025744 AJ422148 CK905282 BQ631039 
    BI518471 BX336795 BM310061 BQ613787 BX399810 CK905281 CA427920 BX399809 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    LRRC25 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CCGCTCCTCA
    LRRC25 Expression
    About this image

    LRRC25 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    LRRC25 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.332156

    UniProtKB/Swiss-Prot: LRC25_HUMAN, Q8N386
    Tissue specificity: Expressed in plasmacytoid dendritic cells (PDC), monocyte-derived dendritic cells (MDDC),
    granulocytes, monocytes, B-lymphocytes, peripheral blood leukocytes, spleen, bone marrow, and, to a lesser
    extent, lymph nodes, fetal liver, and appendix but not in thymus

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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of human and mouse.

    Orthologs for LRRC25 gene from Selected species (see all 6)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Lrrc251 , 5 leucine rich repeat containing 251, 5 62.22(n)1
    51.11(a)1
      8 (34.15 cM)5
    2112281  NM_153074.31  NP_694714.11 
     706168445 


    ENSEMBL Gene Tree for LRRC25 (if available)
    TreeFam Gene Tree for LRRC25 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for LRRC25 (see all 198)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1388015461,2
    --18501495(+) ACAGC-/TGTT  
            
    TGTTG
    1 -- int10--------
    rs748860431,2
    C,F--18501587(+) TGCCCT/CTTCCT 1 -- int11Minor allele frequency- C:0.09WA 118
    rs1850288911,2
    --18501656(+) TGCAGC/TCTTAT 1 -- int10--------
    rs1419677491,2
    --18501747(+) GGGTAC/TTTGTC 1 -- int10--------
    rs81012491,2
    C,F,A,H--18501830(+) CCTGAA/CAAAAC 1 -- int121Minor allele frequency- C:0.33NS EA NA WA CSA 1981
    rs38486461,2
    C,F,A,H--18501986(+) TGGGGG/TTGGTG 1 -- ut31 ese314Minor allele frequency- T:0.28NA WA CSA EA 382
    rs124613821,2
    C,F,H--18502075(+) CTGGGC/TGCAGT 1 -- ut31 ese35Minor allele frequency- T:0.24NA WA EA 366
    rs38486471,2
    C,F,A,H--18502078(+) GGCGCG/AGTGGC 1 -- ut31 ese312Minor allele frequency- A:0.27NA WA CSA EA 379
    rs38486481,2
    C,F,A,H--18502119(+) CGAGGT/CGGGCA 1 -- ut31 ese38Minor allele frequency- C:0.29NA WA CSA 17
    rs621224331,2
    C,F--18502217(+) GGTGGC/TGGGTG 1 -- ut315Minor allele frequency- T:0.20NA WA 128

    HapMap Linkage Disequilibrium report for LRRC25 (18501954 - 18508427 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for LRRC25:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv911276CNV Loss21882294
    nsv911275CNV Loss21882294
    nsv2430CNV Loss18451855
    nsv911274CNV Loss21882294

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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 607518    OMIM disorders: --


    Find genes that share disorders with LRRC25           About GenesLikeMe


    Export disorders for LRRC25 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for LRRC25 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with LRRC25)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Subtractive hybridization reveals the expression of immunoglobulin like transcript 7, Eph-B1, granzyme B, and 3 novel transcripts in human plasmacytoid dendritic cells. (PubMed id 12384430)1, 2, 3, 9 Rissoan M.-C.... Bates E.E.M. (Blood 2002)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (Genome Res. 2003)
    4. Genome-wide YFP fluorescence complementation screen identifies new regulators for telomere signaling in human cells. (PubMed id 21044950)1 Lee O.H....Songyang Z. (amp 2011)
    5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
    6. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    8. Identification of AhR-regulated genes involved in PAH-induced immunotoxicity using a highly-sensitive DNA chip, 3D-Gene Human Immunity and Metabolic Syndrome 9k. (PubMed id 19737606)9 Iwano S....Miyamoto Y. (Toxicol In Vitro 2010)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 126364 HGNC: 29806 AceView: LRRC25 Ensembl:ENSG00000175489 euGenes: HUgn126364
    ECgene: LRRC25 H-InvDB: LRRC25

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for LRRC25 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for LRRC25 gene:
    Search GeneIP for patents involving LRRC25

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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     Block miRNA regulation of human, mouse, rat LRRC25 using miScript Target Protectors SeqTarget long-range PCR primers for resequencing LRRC25
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     Custom PCR Arrays for LRRC25 Search Chromatin IP Primers for LRRC25
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     Search for Antibodies & Assays

     Search Tocris compounds for LRRC25 (LRC25)
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     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

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     Browse ESI BIO Cell Lines and PureStem Progenitors for LRRC25
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     Browse compounds at ApexBio
     Search Addgene for plasmids for LRRC25
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     antibodies-online antibodies for LRRC25 (43 products)
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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