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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

LRP8 Gene

protein-coding   GIFtS: 63
GCID: GC01M053711

low density lipoprotein receptor-related protein 8, apolipoprotein...

 Explore 20 diseases affiliated with
LRP8 via our new
 Human Malady Compendium 
Biological research products
for LRP8
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Low Density Lipoprotein Receptor-Related Protein 8, Apolipoprotein E
Receptor1 2
     HSZ751902
APOER21 2 3 5     ApoE Receptor 22
LRP-82 3     Low-Density Lipoprotein Receptor-Related Protein 82
MCI12 5     Apolipoprotein E Receptor 23

External Ids:    HGNC: 67001   Entrez Gene: 78042   Ensembl: ENSG000001571937   OMIM: 6026005   UniProtKB: Q141143   

Export aliases for LRP8 gene to outside databases

Previous GC identifers: GC01M053346 GC01M052600 GC01M053069 GC01M053081 GC01M053423 GC01M053483 GC01M051826


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for LRP8:
This gene encodes a member of the low density lipoprotein receptor (LDLR) family. Low density lipoprotein receptors are
cell surface proteins that play roles in both signal transduction and receptor-mediated endocytosis of specific
ligands for lysosomal degradation. The encoded protein plays a critical role in the migration of neurons during
development by mediating Reelin signaling, and also functions as a receptor for the cholesterol transport protein
apolipoprotein E. Expression of this gene may be a marker for major depressive disorder. Alternatively spliced
transcript variants encoding multiple isoforms have been observed for this gene. (provided by RefSeq, Jun 2011)

UniProtKB/Swiss-Prot: LRP8_HUMAN, Q14114
Function: Cell surface receptor for Reelin (RELN) and apolipoprotein E (apoE)-containing ligands. LRP8 participates in
transmitting the extracellular Reelin signal to intracellular signaling processes, by binding to DAB1 on its
cytoplasmic tail. Reelin acts via both the VLDL receptor (VLDLR) and LRP8 to regulate DAB1 tyrosine phosphorylation
and microtubule function in neurons. LRP8 has higher affinity for Reelin than VLDLR. LRP8 is thus a key component of
the Reelin pathway which governs neuronal layering of the forebrain during embryonic brain development. Binds the
endoplasmic reticulum resident receptor-associated protein (RAP). Binds dimers of beta 2-glycoprotein I and may be
involved in the suppression of platelet aggregation in the vasculature. Highly expressed in the initial segment of the
epididymis, where it affects the functional expression of clusterin and phospholipid hydroperoxide glutathione
peroxidase (PHGPx), two proteins required for sperm maturation. May also function as an endocytic receptor

Gene Wiki entry for LRP8 (Low density lipoprotein receptor-related protein 8)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_032977.9  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the LRP8 gene promoter:
         RORalpha1   USF1   USF-1   USF2   USF-1:USF-2   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for LRP8

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat LRP8


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p34   Ensembl cytogenetic band:  1p32.3   HGNC cytogenetic band: 1p32.3

LRP8 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
LRP8 gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M053711:  view genomic region     (about GC identifiers)

Start:
53,711,212 bp from pter      End:
53,793,821 bp from pter
Size:
82,610 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: LRP8_HUMAN, Q14114 (See protein sequence)
Recommended Name: Low-density lipoprotein receptor-related protein 8 precursor  
Size: 963 amino acids; 105634 Da
Subunit: Reelin associates with two or more receptor molecules. Interacts with DAB1 and JNK-interacting proteins.
Interacts with SNX17 (By similarity). Interacts with PCSK9
Subcellular location: Cell membrane; Single-pass type I membrane protein (By similarity). Secreted (By similarity).
Note=Isoforms that contain the exon coding for a furin-type cleavage site are proteolytically processed, leading to a
secreted receptor fragment (By similarity)
Miscellaneous: Natural isoforms of apoE (E2, E3, E4) have similar affinities for LRP8
Sequence caution: Sequence=CAA99509.1; Type=Frameshift; Positions=430, 432, 438;
1 PDB 3D structure from and Proteopedia for LRP8:
3A7Q (3D)    
Secondary accessions: B1AMT6 B1AMT7 B1AMT8 O14968 Q86V27 Q99876 Q9BR78
Alternative splicing: 5 isoforms:  Q14114-1   Q14114-2   Q14114-3   Q14114-4   Q14114-5   (Contains an insert in the extracellular part which carries a furin cleavage site)

Explore the universe of human proteins at neXtProt for LRP8: NX_Q14114

Post-translational modifications:

  • O-glycosylated. Some alternatively spliced isoforms lack the O-linked sugar domain (By similarity)1
  • Undergoes sequential, furin and gamma-secretase dependent, proteolytic processing, resulting in the extracellular
  • release of the entire ligand-binding domain as a soluble polypeptide and in the intracellular domain (ICD) release
    into the cytoplasm. The gamma-secretase-dependent proteolytical processing occurs after the bulk of the extracellular
    domain has been shed, in a furin-dependent manner, in alternatively spliced isoforms carrying the furin cleavage site.
    Hypoglycosylation (mainly hypo-O-glycosylation) leads to increased extracellular cleavage, which in turn results in
    accelerating release of the intracellular domain (ICD) by the gamma-secretase. The resulting receptor fragment is able
    to inhibit Reelin signaling and in particular the Reelin-induced DAB1 phosphorylation (By similarity)1
  • Tyrosine phosphorylated upon apoE binding1
  • Ubiquitinated by MYLIP leading to degradation1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q14114

  • LRP8 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (4 alternative transcripts): 
    NP_001018064.1  NP_004622.2  NP_059992.3  NP_150643.2  

    ENSEMBL proteins: 
     ENSP00000303634   ENSP00000431241   ENSP00000360509   ENSP00000437009   ENSP00000346391  
     ENSP00000433554   ENSP00000334522   ENSP00000435346   ENSP00000436651  
    Reactome Protein details: Q14114
    Human Recombinant Protein Products: 
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    OriGene Protein Over-expression Lysate (see all 2): LRP8
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    Novus Biologicals LRP8 Protein
    Novus Biologicals LRP8 Lysate
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for LRP8

    Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005576extracellular region IEA--
    GO:0005886plasma membrane TAS--
    GO:0005901caveola IDA11369809
    GO:0016021integral to membrane IC11152697


    LRP8 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    LRP8 for domains           About GeneDecksing

    5/11 InterPro domains/families (see all 11):
     IPR000033 LDLR_classB_rpt
     IPR023415 LDLR_class-A_CS
     IPR000742 EG-like_dom
     IPR026823 cEGF
     IPR000152 EGF-type_Asp/Asn_hydroxyl_site

    Graphical View of Domain Structure for InterPro Entry Q14114

    ProtoNet protein and cluster: Q14114

    4 Blocks protein families:
    IPB000033 Low-density lipoprotein receptor
    IPB000152 Aspartic acid and asparagine hydroxylation site
    IPB001881 EGF-like calcium-binding
    IPB002172 Low density lipoprotein-receptor


    UniProtKB/Swiss-Prot: LRP8_HUMAN, Q14114
    Domain: The cytoplasmic domain is involved in the binding of DAB1 and in the recruitment of JNK-interacting proteins.
    Isoforms, which lack part of the cytoplasmic domain, are unable to recruit members of the family of JNK interacting
    proteins (JIP) to the cytoplasmic tail (By similarity)
    Similarity: Belongs to the LDLR family
    Similarity: Contains 2 EGF-like domains
    Similarity: Contains 7 LDL-receptor class A domains
    Similarity: Contains 5 LDL-receptor class B repeats


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: LRP8_HUMAN, Q14114
    Function: Cell surface receptor for Reelin (RELN) and apolipoprotein E (apoE)-containing ligands. LRP8 participates in
    transmitting the extracellular Reelin signal to intracellular signaling processes, by binding to DAB1 on its
    cytoplasmic tail. Reelin acts via both the VLDL receptor (VLDLR) and LRP8 to regulate DAB1 tyrosine phosphorylation
    and microtubule function in neurons. LRP8 has higher affinity for Reelin than VLDLR. LRP8 is thus a key component of
    the Reelin pathway which governs neuronal layering of the forebrain during embryonic brain development. Binds the
    endoplasmic reticulum resident receptor-associated protein (RAP). Binds dimers of beta 2-glycoprotein I and may be
    involved in the suppression of platelet aggregation in the vasculature. Highly expressed in the initial segment of the
    epididymis, where it affects the functional expression of clusterin and phospholipid hydroperoxide glutathione
    peroxidase (PHGPx), two proteins required for sperm maturation. May also function as an endocytic receptor

         Genatlas biochemistry entry for LRP8:
    low density lipoprotein receptor-related protein 8

    miRNA
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    8/112 QIAGEN miScript miRNA Assays for microRNAs that regulate LRP8 (see all 112):
    hsa-miR-520e hsa-miR-520f hsa-miR-3607-3p hsa-miR-106a hsa-miR-374a hsa-miR-3921 hsa-miR-342-3p hsa-miR-3916
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LRP8

    Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004888transmembrane signaling receptor activity TAS8626535
    GO:0005509calcium ion binding IEA--
    GO:0005515protein binding IPI12950167
    GO:0030229very-low-density lipoprotein particle receptor activity IDA8626535
    GO:0034185apolipoprotein binding IC8626535


    LRP8 for ontologies           About GeneDecksing


    1 GenomeRNAi human phenotype for LRP8:
     Increased gamma-H2AX phosphory 

    Animal Models:
         Mouse knock-outs for LRP8: Lrp8tm5Her Lrp8tm1Her
         7 MGI mutant phenotypes (inferred from 5 alleles(MGI details for Lrp8):
     behavior/neurological  cellular  growth/size  mortality/aging  nervous system 
     normal  reproductive system 

    LRP8 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/10 super-pathways (see all 10About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Retinoid metabolism and transport
    Retinoid metabolism and transport1.00
    Diseases associated with visual transduction0.73
    Visual phototransduction0.74
    2Platelet sensitization by LDL
    Platelet sensitization by LDL1.00
    3Disease
    Disease1.00
    4Reelin Pathway (Cajal-Retzius cells)
    Reelin Pathway (Cajal-Retzius cells)1.00
    5Guidance Cues and Growth Cone Motility
    Guidance Cues and Growth Cone Motility1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    2 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for LRP8
        Guidance Cues and Growth Cone Motility
    Reelin Pathway (Cajal-Retzius cells)

    2 BioSystems Pathways for LRP8 
        Reelin signaling pathway
    Lissencephaly gene (LIS1) in neuronal migration and development

    5/8        Reactome Pathways for LRP8 (see all 8)
        Diseases associated with visual transduction
    Hemostasis
    Platelet homeostasis
    Visual phototransduction
    Disease



    LRP8 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for LRP8

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/44 Interacting proteins for LRP8 (Q141143 ENSP000003036344) via UniProtKB, MINT, STRING, and/or I2D (see all 44)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    DAB1O755533, ENSP000003602774I2D: score=5 STRING: ENSP00000360277
    DLG4P783523, ENSP000002938134I2D: score=4 STRING: ENSP00000293813
    SNX17Q150363, ENSP000002335754I2D: score=4 STRING: ENSP00000233575
    MAPK8IP1Q9UQF23, ENSP000002410144I2D: score=3 STRING: ENSP00000241014
    APOEP026493, ENSP000002524864I2D: score=2 STRING: ENSP00000252486
    About this table

    Gene Ontology (GO): 5/18 biological process terms (GO ID links to tree view) (see all 18):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000122negative regulation of transcription from RNA polymerase II promoter ISS--
    GO:0006508proteolysis NAS11152697
    GO:0006629lipid metabolic process NAS11152697
    GO:0006897endocytosis IDA8626535
    GO:0007165signal transduction TAS10380922


    LRP8 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    LRP8 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for LRP8
    9 Novoseek chemical compound relationships for LRP8 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    tyrosine 36.2 7 12681505 (2), 15883038 (2), 12737822 (1), 12376533 (1) (see all 5)
    phosphotyrosine 34.2 3 12882964 (1), 12737822 (1), 16951405 (1)
    cholesterol 26.3 5 11111096 (1), 16973241 (1)
    phosphoinositide 23.7 1 15883038 (1)
    nmda 18.3 4 16332682 (3)
    lipid 12.6 13 17620134 (4), 16354676 (1), 19519777 (1), 16101684 (1) (see all 6)
    phosphatidylinositol 12.2 2 12681505 (1)
    phospholipid 4.87 3 16091370 (2)
    nitric oxide 0 2 12681505 (1)

    Search CenterWatch for drugs/clinical trials and news about LRP8 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for LRP8 gene (4 alternative transcripts): 
    NM_001018054.2  NM_004631.4  NM_017522.4  NM_033300.3  

    Unigene Cluster for LRP8:

    Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
    Hs.280387  [show with all ESTs]
    Unigene Representative Sequence: NM_004631
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000306052(uc001cvh.2 uc001cvi.2 uc001cvj.2 uc001cvk.2 uc001cvl.2)
    ENST00000529670 ENST00000371454 ENST00000465675 ENST00000354412 ENST00000480045
    ENST00000347547 ENST00000459674(uc001cvm.1) ENST00000460214 ENST00000481431
    ENST00000475501 ENST00000496580

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    Additional cDNA sequence: 

    AK096482.1 BC006443.1 BC051836.1 D50678.1 Z75190.1 

    12 DOTS entries:

    DT.100755084  DT.446842  DT.91822804  DT.92422864  DT.75101936  DT.100023860  DT.121327741  DT.100755085 
    DT.121327806  DT.437200  DT.91720169  DT.91754822 

    24/83 AceView cDNA sequences (see all 83):

    BX103904 BC051836 CA396045 BC006443 AI805485 CA433320 BU621479 BQ775541 
    BU169869 BU618740 AI656309 BM477111 BE543079 BG152550 AI655682 AA307126 
    AW594267 NM_017522 BM083365 BU941153 BM547764 AK122887 BM760939 BX492617 

    GeneLoc Exon Structure

    5/9 Alternative Splicing Database (ASD) splice patterns (SP) for LRP8 (see all 9)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b ^ 14 ^ 15 ^ 16a · 16b ^ 17 ^ 18a · 18b ^ 19 ^
    SP1:        -                 -                             -                                                                             -                     
    SP2:        -                 -                             -                                                                             -                     
    SP3:        -                 -           -                 -                                                                             -     -     -         
    SP4:                          -           -                 -           -                                                                 -                     
    SP5:                                                                                                                                                            

    ExUns: 20 ^ 21 ^ 22a · 22b · 22c · 22d · 22e
    SP1:                                          
    SP2:        -                                 
    SP3:        -                                 
    SP4:        -                                 
    SP5:                                          


    ECgene alternative splicing isoforms for LRP8

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    LRP8 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: CTGTGGATGA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    LRP8 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    4 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    BrainBlood Brain BarrierAdult Endothelial CellsBlood Brain Barrier, Endothelium
    BrainBlood Brain BarrierEndothelial CellsBlood Brain Barrier, Endothelium
    BrainBlood Brain BarrierPostnatal Endothelial CellsBlood Brain Barrier, Endothelium
    BoneZeugopod Growth PlateBone
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    Line H9 (WA09) (Embryonic Stem Cell)Early Embryo, Inner Cell Mass

    See LRP8 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for LRP8

    SOURCE GeneReport for Unigene cluster: Hs.280387

    UniProtKB/Swiss-Prot: LRP8_HUMAN, Q14114
    Tissue specificity: Expressed mainly in brain and placenta. Also expressed in platelets and megakaryocytic cells. Not
    expressed in the liver

        SABiosciences Expression via Pathway-Focused PCR Array including LRP8: 
              Alzheimer's Disease in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for LRP8 gene from 3/14 species (see all 14)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves LRP81 low density lipoprotein receptor-related protein 8, more 70.81(n)
    72.59(a)
      396102  NM_205186.1  NP_990517.1 
    lizard
    (Anolis carolinensis)
    Reptilia LRP86
    --
    65(a)
    1 ↔ 1
    4(115063613-115111919)
    zebrafish
    (Danio rerio)
    Actinopterygii apoer21 apolipoprotein E receptor 2 64.22(n)
    62.01(a)
      557734  XM_001920081.3  XP_001920116.3 


    ENSEMBL Gene Tree for LRP8 (if available)
    TreeFam Gene Tree for LRP8 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for LRP8 gene
    LRP52  LRP62  LRP22  SORL12  LRP1B2  EGF2  LDLR2  LRP5L2  
    LRP42  VLDLR2  NID22  NID12  LRP12  
    12 SIMAP similar genes for LRP8 using alignment to 7 protein entries:     LRP8_HUMAN (see all proteins):
    ldlr    LDLR    VLDLR    LRP5L    PROS1    LRP5
    LRP4    LRP6    SCUBE2    LRP2    LRP1    LRP1B

    LRP8 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1452 NCBI SNPs in LRP8 are shown (see all 1452    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs51741,2
    C,F,A,H,other53712727(-) CCAGCA/GAGTGG 8 Q R mis1 ese332Minor allele frequency- N:0.00MN NS EA NA CSA WA EU 8917
    rs118101291,2
    C,H--51823308(+) GAAGTA/TTTGGG 4 -- ds50014Minor allele frequency- T:0.00NS EA 410
    rs112061261,2
    C,A,H,--51824523(+) GAGTTA/CGGGGG 4 -- ut310--------
    rs177853881,2
    C,F,--51825124(+) ACTTCT/AATGAT 4 -- ut315Minor allele frequency- A:0.02NA 260
    rs617696221,2
    --51826684(+) GTTGTC/TTAGTG 4 -- ut312Minor allele frequency- T:0.03NA 122
    rs601034381,2
    C,--51826749(+) GGGAAC/AGCCAC 4 -- ut311Minor allele frequency- A:0.50WA 2
    rs617696231,2
    --51826766(+) CTGAAC/TCCTTC 4 -- ut310--------
    rs10613701,2
    C,H--51826907(-) AAAGGA/GAAAAC 4 -- ut31 trp32Minor allele frequency- G:0.00NS NA 228
    rs51791,2
    C,H--51827268(-) TACAGA/TGCTAA 4 -- ut31 ese36Minor allele frequency- T:0.01MN NS EA 680
    rs51781,2
    C,H--51827357(-) GCTCTT/CTGAGT 4 -- ut316Minor allele frequency- C:0.01MN NS EA 670

    HapMap Linkage Disequilibrium report for LRP8 (53711212 - 53793821 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for LRP8
         1 CNV: 5196
         1 Indel: 68663
    Human Gene Mutation Database (HGMD): LRP8

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    LRP8 for disorders           About GeneDecksing

    OMIM gene information: 602600   
    OMIM disorders: 608446  
    UniProtKB/Swiss-Prot: LRP8_HUMAN, Q14114
  • Defects in LRP8 are a cause of myocardial infarction type 1 (MCI1) [MIM:608446]. A condition defined by the
  • irreversible necrosis of heart muscle secondary to prolonged ischemia

    20 diseases for LRP8:    About MalaCards
    major depressive disorder    osteoporosis-pseudoglioma syndrome    myocardial infarction susceptibility    myocardial infarction
    cholesterol    cerebellar hypoplasia    antiphospholipid syndrome    neuronitis
    osteoporosis    lissencephaly    alzheimer's disease    hepatitis c
    kidney disease    dementia    pancreatic cancer    pancreatitis
    atherosclerosis    hepatitis    hypertension    cerebritis

    1 Novoseek disease relationship for LRP8 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    alzheimers disease 40.4 6 12399018 (2), 20208369 (1)

    Genetic Association Database (GAD): LRP8
    Human Genome Epidemiology (HuGE) Navigator: LRP8 (14 documents)

    Export disorders for LRP8 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for LRP8 gene, integrated from 9 sources (see all 133):
    (articles sorted by number of sources associating them with LRP8)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Low-density lipoprotein receptor-related protein 8 (apolipoprotein E receptor 2) gene polymorphisms in Alzheimer's disease. (PubMed id 12399018)1, 2, 4, 9 Ma S.L....Lam L.C. (2002)
    2. Human apolipoprotein E receptor 2. A novel lipoprotein receptor of the low density lipoprotein receptor family predominantly expressed in brain. (PubMed id 8626535)1, 2, 3, 9 Kim D.-H.... Yamamoto T. (1996)
    3. Exon/intron organization, chromosome localization, alternative splicing, and transcription units of the human apolipoprotein E receptor 2 gene. (PubMed id 9079678)1, 2, 3, 9 Kim D.-H.... Yamamoto T.T. (1997)
    4. Differential binding of ligands to the apolipoprotein E receptor 2. (PubMed id 12899622)1, 2, 9 Andersen O.M.... Willnow T.E. (2003)
    5. Identification of a novel exon in apolipoprotein E receptor 2 leading to alternatively spliced mRNAs found in cells of the vascular wall but not in neuronal tissue. (PubMed id 11152697)1, 2, 9 Korschineck I.... Binder B.R. (2001)
    6. Expression and alternate splicing of apolipoprotein E receptor 2 in brain. (PubMed id 10218790)1, 2, 9 Clatworthy A.E.... Rebeck G.W. (1999)
    7. The proprotein convertase PCSK9 induces the degradation of low density lipoprotein receptor (LDLR) and its closest family members VLDLR and ApoER2. (PubMed id 18039658)1, 2, 9 Poirier S....Seidah N.G. (2008)
    8. Domains of apoE required for binding to apoE receptor 2 and to phospholipids: implications for the functions of apoE in the brain. (PubMed id 12950167)1, 2, 9 Li X.... Zannis V. (2003)
    9. Dimers of beta 2-glycoprotein I increase platelet deposition to collagen via interaction with phospholipids and the apolipoprotein E receptor 2'. (PubMed id 12807892)1, 2, 9 Lutters B.C....de Groot P.G. (2003)
    10. Apolipoprotein E (apoE) isoforms differentially induce nitric oxide production in endothelial cells. (PubMed id 12681505)1, 2, 9 Sacre S.M.... Owen J.S. (2003)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 7804 HGNC: 6700 AceView: LRP8 Ensembl:ENSG00000157193 euGenes: HUgn7804
    ECgene: LRP8 H-InvDB: LRP8

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for LRP8 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for LRP8 gene:
    Search GeneIP for patents involving LRP8

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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