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Aliases for LRGUK Gene

Aliases for LRGUK Gene

  • Leucine-Rich Repeats And Guanylate Kinase Domain Containing 2 3

External Ids for LRGUK Gene

Previous GeneCards Identifiers for LRGUK Gene

  • GC07P133463
  • GC07P133812
  • GC07P128113

Summaries for LRGUK Gene

GeneCards Summary for LRGUK Gene

LRGUK (Leucine-Rich Repeats And Guanylate Kinase Domain Containing) is a Protein Coding gene. GO annotations related to this gene include kinase activity. An important paralog of this gene is GUK1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LRGUK Gene

Genomics for LRGUK Gene

Regulatory Elements for LRGUK Gene

Genomic Location for LRGUK Gene

Start:
134,127,299 bp from pter
End:
134,264,591 bp from pter
Size:
137,293 bases
Orientation:
Plus strand

Genomic View for LRGUK Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LRGUK Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRGUK Gene

Proteins for LRGUK Gene

  • Protein details for LRGUK Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96M69-LRGUK_HUMAN
    Recommended name:
    Leucine-rich repeat and guanylate kinase domain-containing protein
    Protein Accession:
    Q96M69
    Secondary Accessions:
    • Q2M3I1

    Protein attributes for LRGUK Gene

    Size:
    825 amino acids
    Molecular mass:
    93618 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LRGUK Gene

Proteomics data for LRGUK Gene at MOPED

Post-translational modifications for LRGUK Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for LRGUK Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LRGUK Gene

Domains for LRGUK Gene

Protein Domains for LRGUK Gene

Suggested Antigen Peptide Sequences for LRGUK Gene

Graphical View of Domain Structure for InterPro Entry

Q96M69

UniProtKB/Swiss-Prot:

LRGUK_HUMAN :
  • Q96M69
Domain:
  • Contains 1 guanylate kinase-like domain.
  • Contains 1 LRRCT domain.
Similarity:
  • Contains 9 LRR (leucine-rich) repeats.
genes like me logo Genes that share domains with LRGUK: view

No data available for Gene Families for LRGUK Gene

Function for LRGUK Gene

Gene Ontology (GO) - Molecular Function for LRGUK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0005524 ATP binding IEA --
GO:0016301 kinase activity IEA --
genes like me logo Genes that share ontologies with LRGUK: view

Phenotypes for LRGUK Gene

GenomeRNAi human phenotypes for LRGUK:
genes like me logo Genes that share phenotypes with LRGUK: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for LRGUK

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LRGUK Gene

Localization for LRGUK Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LRGUK Gene COMPARTMENTS Subcellular localization image for LRGUK gene
Compartment Confidence
cytosol 3
mitochondrion 3
nucleus 1

Gene Ontology (GO) - Cellular Components for LRGUK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with LRGUK: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for LRGUK Gene

Pathways for LRGUK Gene

SuperPathways for LRGUK Gene

No Data Available

Interacting Proteins for LRGUK Gene

Gene Ontology (GO) - Biological Process for LRGUK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016310 phosphorylation IEA --
genes like me logo Genes that share ontologies with LRGUK: view

No data available for Pathways by source for LRGUK Gene

Transcripts for LRGUK Gene

mRNA/cDNA for LRGUK Gene

(17) Selected AceView cDNA sequences:
(5) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LRGUK Gene

Leucine-rich repeats and guanylate kinase domain containing:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for LRGUK

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for LRGUK

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LRGUK Gene

No ASD Table

Relevant External Links for LRGUK Gene

GeneLoc Exon Structure for
LRGUK
ECgene alternative splicing isoforms for
LRGUK

Expression for LRGUK Gene

mRNA expression in normal human tissues for LRGUK Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for LRGUK Gene

This gene is overexpressed in Testis (10.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for LRGUK Gene

SOURCE GeneReport for Unigene cluster for LRGUK Gene Hs.149774

genes like me logo Genes that share expressions with LRGUK: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for LRGUK Gene

Orthologs for LRGUK Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for LRGUK Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LRGUK 35
  • 99.43 (n)
  • 99.15 (a)
LRGUK 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LRGUK 35
  • 83.17 (n)
  • 74.82 (a)
LRGUK 36
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LRGUK 35
  • 85.14 (n)
  • 79.9 (a)
LRGUK 36
  • 76 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Lrguk 35
  • 78.12 (n)
  • 73.72 (a)
Lrguk 16
Lrguk 36
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia LRGUK 36
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia LRGUK 36
  • 73 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Lrguk 35
  • 78.57 (n)
  • 73.96 (a)
chicken
(Gallus gallus)
Aves LRGUK 35
  • 64.02 (n)
  • 58.08 (a)
lizard
(Anolis carolinensis)
Reptilia LRGUK 36
  • 48 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia lrguk 35
  • 60.65 (n)
  • 56.67 (a)
zebrafish
(Danio rerio)
Actinopterygii lrguk 35
  • 54.49 (n)
  • 49.36 (a)
lrguk 36
  • 45 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea magu-3 36
  • 13 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes GUK1 36
  • 19 (a)
OneToMany
NUD1 38
Species with no ortholog for LRGUK:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for LRGUK Gene

ENSEMBL:
Gene Tree for LRGUK (if available)
TreeFam:
Gene Tree for LRGUK (if available)

Paralogs for LRGUK Gene

Paralogs for LRGUK Gene

genes like me logo Genes that share paralogs with LRGUK: view

Variants for LRGUK Gene

Sequence variations from dbSNP and Humsavar for LRGUK Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs364421 -- 134,264,395(-) ACATA(C/T)TGAAA downstream-variant-500B
rs364445 -- 134,147,954(+) CTACT(C/G)GGGAG intron-variant
rs364683 -- 134,190,482(+) ggatt(A/G)caggc intron-variant
rs368891 -- 134,125,964(-) tggag(G/T)gcagt upstream-variant-2KB
rs381356 -- 134,177,366(+) TATCA(A/G)TTTGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LRGUK Gene

Variant ID Type Subtype PubMed ID
nsv889216 CNV Gain 21882294
dgv2139e1 CNV Complex 17122850
nsv428186 CNV Gain 18775914
nsv521054 CNV Loss 19592680
nsv5957 CNV Loss 18451855
nsv508483 CNV Loss 20534489
nsv507421 CNV Insertion 20534489
esv259779 OTHER Complex 20981092
nsv831145 CNV Gain 17160897
esv267899 CNV Insertion 20981092
esv2735177 CNV Deletion 23290073
esv2735178 CNV Deletion 23290073
esv2735179 CNV Deletion 23290073
esv2677377 CNV Deletion 23128226

Relevant External Links for LRGUK Gene

HapMap Linkage Disequilibrium report
LRGUK
Human Gene Mutation Database (HGMD)
LRGUK

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LRGUK Gene

Disorders for LRGUK Gene

Relevant External Links for LRGUK

Genetic Association Database (GAD)
LRGUK
Human Genome Epidemiology (HuGE) Navigator
LRGUK
genes like me logo Genes that share disorders with LRGUK: view

No data available for UniProtKB/Swiss-Prot for LRGUK Gene

Publications for LRGUK Gene

  1. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Polymorphisms near EXOC4 and LRGUK on chromosome 7q32 are associated with Type 2 Diabetes and fasting glucose; the NHLBI Family Heart Study. (PMID: 18498660) Laramie J.M. … Myers R.H. (BMC Med. Genet. 2008) 3 48
  4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 48
  5. Genome-wide association with select biomarker traits in the Framingham Heart Study. (PMID: 17903293) Benjamin E.J. … Vasan R.S. (BMC Med. Genet. 2007) 48

Products for LRGUK Gene

  • Addgene plasmids for LRGUK

Sources for LRGUK Gene

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