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Aliases & Descriptions for LOX gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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User Feedback Aliases & Descriptions lysyl oxidase1 2 3 MGC1051122 protein-lysine 6-oxidase2 EC 1.4.3.133
Search outside databases for aliases for LOX genePrevious GC identifers: GC05M121103 GC05M121800 GC05M121432 GC05M121478
Summaries for LOX gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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User Feedback Entrez Gene summary for LOX : The protein encoded by this gene is an extracellular copper enzyme that initiates the crosslinking of collagens and elastin. The enzyme catalyzes oxidative deamination of the epsilon-amino group in certain lysine and hydroxylysine residues of collagens and lysine residues of elastin. In addition to crosslinking extracellular matrix proteins, the encoded protein may have a role in tumor suppression. (provided by RefSeq) UniProtKB/Swiss-Prot: LYOX_HUMAN, P28300 Function : Responsible for the post-translational oxidative deamination of peptidyl lysine residues in precursors tofibrous collagen and elastin. In addition to cross-linking of extracellular matrix proteins, may have a direct role in tumor suppression Gene Wiki entry for LOX (Lysyl oxidase)
Genomic Views for LOX gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl (release 56) ,
Regulatory elements and Epigenetics data according to
SABiosciences )About This Section
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User Feedback Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the LOX gene upstream (promoter) region :AP-1 NF-1 Max1 c-Myc CREB deltaCREB c-Fos c-Jun IRF-1 NF-kappaB1 Epigenetics: SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for LOX: MePH28510-1A Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 5q23.2 Ensembl cytogenetic band: 5q23.2 HGNC cytogenetic band: 5q23.3-q31.2 LOX Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 5 GeneLoc Exon Structure
GeneLoc location for GC05M121429: view genomic region
(about GC identifiers )
Start:
121,398,890 bp from pter
End:
121,414,055 bp from pter
Size:
15,166 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000005.9 NT_034772.6 Proteins for LOX gene
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Sino Biological ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 May 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
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User Feedback UniProtKB/Swiss-Prot: LYOX_HUMAN, P28300 (See
protein sequence )Recommended Name: Protein-lysine 6-oxidase precursor Size : 417 amino acids; 46944 Da
Cofactor : Copper
Cofactor : Contains 1 lysine tyrosylquinone (By similarity)
Subcellular location : Secreted, extracellular space
Miscellaneous : The propeptide plays a role in directing the deposition of this enzyme to elastic fibers, viainteraction with tropoelastin (By similarity)
Secondary accessions : B2R5Q3 Q5FWF0Post-translational modifications:
The lysine tyrosylquinone cross-link (LTQ) is generated by condensation of the epsilon-amino group of a lysine with a topaquinone produced by oxidation of tyrosine1
REFSEQ proteins: NP_002308.2 ENSEMBL proteins: ENSP00000378862 ENSP00000231004 Human Recombinant Proteins 4 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
LOX for ontologies About GeneDecksing Antibodies for LOX: Assays for LOX:
Protein
Domains/ Families for LOX gene(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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LOX for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P28300 ProtoNet protein and cluster: P28300
1 Blocks protein family : IPB001695 Lysyl oxidase UniProtKB/Swiss-Prot: LYOX_HUMAN, P28300 Similarity : Belongs to the lysyl oxidase family
Gene Function for LOX gene
(According to MGI May 08 2010, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Millipore ,
Abnova ,
siRNAs from
Applied Biosystems ,
Sigma-Aldrich , Clones from
Millipore ,
Sigma-Aldrich ,
OriGene ,
Sino Biological ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene .)
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User Feedback UniProtKB/Swiss-Prot: LYOX_HUMAN, P28300 Function : Responsible for the post-translational oxidative deamination of peptidyl lysine residues in precursors tofibrous collagen and elastin. In addition to cross-linking of extracellular matrix proteins, may have a direct role in tumor suppression Catalytic activity : Peptidyl-L-lysyl-peptide + O(2) + H(2)O = peptidyl-allysyl-peptide + NH(3) + H(2)O(2)Enzyme Number (IUBMB): EC 1.4.3.13
Genatlas biochemistry entry for LOX :lysyl oxidase,copper dependent,processed by BMP1 to the mature enzyme necessary for the formation of covalent cross-links in collagen and elastic fibers 5/6 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 6
):
GO ID Qualified GO term Evidence PubMed IDs GO:0004720 protein-lysine 6-oxidase activity
IEA -- GO:0005507 copper ion binding
IEA -- GO:0005515 protein binding
IEA -- GO:0016491 oxidoreductase activity
IEA -- GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor
-- --
About this table
LOX for ontologies About GeneDecksing Animal Models: 7 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Lox) :
LOX for phenotypes About GeneDecksing Pathways & Interactions for LOX gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
Applied Biosystems GeneAssist ,
KEGG
and/or UniProtKB ,
(map by GeneGo ),
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene) .
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User Feedback SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for LOX 5/9 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 9
):
About this table
LOX for ontologies About GeneDecksing
Drugs & Compounds for LOX gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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LOX for compounds About GeneDecksing Browse Tocris compounds for LOX 10/524 Novoseek chemical compound relationships for LOX gene (see all 524
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
beta-aminopropionitrile
100.00
87
19524603 (3), 18586678 (3), 7544946 (2), 6141164 (2) (see all 71 )
arachidonic acid
89.95
157
8485318 (4), 15931672 (4), 11406473 (4), 9467967 (3) (see all 100 )
ndga
88.38
64
16118472 (3), 9258337 (2), 18719338 (2), 15801029 (2) (see all 55 )
copper
78.58
169
16635319 (9), 9355764 (6), 1674861 (6), 10573541 (6) (see all 96 )
amine
52.94
72
2571459 (4), 11642359 (4), 235299 (3), 18835815 (3) (see all 54 )
linoleic acid
40.20
58
9693089 (4), 7810887 (3), 17117812 (3), 10574694 (3) (see all 43 )
jasmonic acid
37.42
35
16168955 (4), 19522815 (3), 14991649 (3), 9927708 (2) (see all 24 )
methyljasmonate
23.91
21
14682619 (4), 12126709 (3), 17611116 (2), 14697246 (2) (see all 13 )
desmosine
22.17
15
12918034 (2), 6170751 (1), 6102412 (1), 30449 (1) (see all 14 )
hydroxylysine
17.45
13
9681684 (1), 906929 (1), 9031521 (1), 8530522 (1) (see all 13 )
About this table
Transcripts for LOX gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 223 Homo sapiens; Apr 2 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Primers from
OriGene and/or
SABiosciences , Expression Assays from Applied Biosystems )About This Section
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User Feedback microRNA: 1 SABiosciences microRNA that regulate LOX : hsa-miR-145
Assays: Applied Biosystems TaqMan® Gene Expression Assays: NM_002317 Clones: Origene GFP tagged cDNA clones in CMV expression vector: LOX Origene Myc/DDK tagged cDNA clones in CMV expression vector: LOX Origene untagged cDNA clones in CMV expression vector: LOX
Primers: Origene genome-wide validated SYBR primer pairs: LOX SABiosciences RT2 qPCR Primer Assay for LOX: PPH01956A
REFSEQ mRNAs for LOX gene: NM_002317.4
Additional cDNA sequence: AF039291.1 AK297709.1 AK298781.1 AK307559.1 AK307732.1 AK311354.1 AK312269.1 AK315873.1 AK316309.1 BC074820.2 BC074872.2 BC089436.1 CR591353.1 M94054.1 S45875.1 S78694.1
14 DOTS entries : DT.454042 DT.92428708 DT.100019519 DT.95273505 DT.120804894 DT.120804911 DT.120804946 DT.120804902
DT.120804943 DT.92428700 DT.102829366 DT.120804908 DT.95273508 DT.99970925 24/354 AceView cDNA sequences (see all 354
):
AI343556 AI954506 CA412280 AA599304 AI141565 AI755066 AI831839 AA515402 BF112095 AI924187 CA418190 CA419687 AI752963 CA421542 AL711116 N24205 W70343 AI075382 H99862 AI075456 BU634047 BM997672 W77730 CF264898
highest scoring ESTs for LOX :AA022565 AA039556 AA194911 AA195621 AA235754 AA235755 AA236779 AA236819 AA334844 AA410518 Unigene Cluster for LOX:
Lysyl oxidase Hs.102267 [show with all ESTs ] Unigene Representative Sequence: NM_002317 GeneLoc Exon Structure 5/6 Alternative Splicing Database (ASD) splice patterns (SP) for LOX (see all 6
) ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c · 8d ^ 9a · 9b · 9c ^ 10 SP1 :     -   -     -       -                   SP2 :     -   -   -   -                         SP3 :         -   -       -                   SP4 :           -       -                   SP5 :                 -                  
About this scheme ECgene alternative splicing isoforms for LOX 2 Ensembl transcripts including schematic representations : ENST00000395480
ENST00000231004
Expression for LOX gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 223 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems ,
Primers from
OriGene and/or
SABiosciences
)
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User Feedback LOX expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for LOX 1 / 2 / 3
9 probe-sets matching LOX gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
44846_r_at2 , 3
U95-B
1
0.88
1.00
0.81
0.89
AI760939
0.40
1.00
0.76
1
38637_at2 , 3
U95-A
1
0.75
1.00
0.91
1.16
L16895
0.20
1.00
0.72
1
44845_i_at2 , 3
U95-B
1
0.71
1.00
0.91
0.99
AI760939
0.40
1.00
0.76
1
213640_s_at2 , 3
U133-A
1
1.00
1.00
--
--
BE503425
0.80
1.00
0.91
1
215446_s_at2 , 3
U133-A
1
0.82
1.00
--
--
L16895
0.20
1.00
0.72
1
204298_s_at2 , 3
U133-A
1
0.82
1.00
--
--
NM_002317
0.60
1.00
0.82
1
213640_s_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
215446_s_at2
U133Plus2
1
0.82
1.00
--
--
--
--
--
--
--
204298_s_at2
U133Plus2
1
0.82
1.00
--
--
--
--
--
--
--
About this table
LOX for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TATGTATTTC SOURCE GeneReport for Unigene cluster: Hs.102267 Expression variation in blood from EXPOLDB for LOX
UniProtKB/Swiss-Prot: LYOX_HUMAN, P28300 Tissue specificity : Heart, placenta, skeletal muscle, kidney, lung and pancreas
Primers: Origene genome-wide validated SYBR primer pairs: LOX SABiosciences RT2 qPCR Primer Assay for LOX: PPH01956A
Orthologs for LOX gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI May 08 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for LOX gene from 5/6 species (see all 6
)
About this table Species with no ortholog for LOX ENSEMBL Gene Tree for LOX Paralogs for LOX gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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User Feedback Paralogs for LOX gene LOXL2 2 MARCO 2 CD6 2 LOXL4 2 CD163L1 2 CD163 2 LOXL3 2 PRSS12 2 SSC5D 2 CD5L 2 SRCRB4D 2 LOXL1 2 MSR1 2 SCARA5 2 LOC619207 2 DMBT1 2
LOX for paralogs About GeneDecksing
Genomic Variants for LOX gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants ,
Genotyping Reagents from
Applied Biosystems )
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The following additional 64 SNP(s) have been
found in Applied Biosystems data source:(Click
for
Applied Biosystems TaqMan ® Genotyping Assay ) HapMap Linkage Disequilibrium images for LOX (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for LOX: --
Disorders & Mutations for LOX gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
BCGD,
and/or TGDB .)
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LOX for disorders About GeneDecksing
OMIM: 153455 disorders : 219100 UniProtKB/Swiss-Prot: LYOX_HUMAN, P28300
Defects in LOX may be a cause of autosomal recessive cutis laxa type I (CL type I) [MIM:219100]
10/290 Novoseek disease relationships for LOX gene (see all 290
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
menkes
22.19
19
6112984 (5), 17584760 (3), 9556668 (2), 8638917 (2) (see all 10 )
oral submucous fibrosis
18.65
15
8537914 (5), 10426196 (4), 18764858 (3), 12101112 (2) (see all 5 )
ehlers-danlos syndrome type v
9.00
3
7086195 (1), 240645 (1), 1448 (1)
cutis laxa
8.10
7
953234 (1), 9111998 (1), 7930686 (1), 7508709 (1) (see all 7 )
occipital horn syndrome
7.36
4
8638917 (2), 6104292 (1), 11431706 (1)
pelvic organ prolapse
6.02
8
19087518 (5), 16419630 (3)
oropharyngeal squamous cell carcinoma
5.95
5
19816945 (5)
retinal detachment rhegmatogenous
5.04
7
18566459 (4), 19369240 (3)
invasive breast cancer
4.45
9
16357151 (4), 17685448 (3), 17130123 (1), 16440329 (1)
fibrosis liver
3.83
12
26918 (2), 1683640 (2), 8698196 (1), 7899140 (1) (see all 10 )
About this table Human Gene Mutation Database : LOX Genetic Association Database: LOX Human Genome Epidemiology Navigator: LOX (10 documents)
Medical News for LOX gene (Possibly Related Articles in
Doctor's Guide )
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Publications for LOX gene (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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User Feedback 10/556 PubMed articles for LOX gene (see all 556
): Molecular cloning of human lysyl oxidase and assignment of the gene to chromosome 5q23.3-31.2. (PubMed id 1685472) 1, 2, 3 , 4 Haemaelaeinen E.-R.... Kivirikko K.I. (1991) Epigenetic inhibition of lysyl oxidase transcription after transformation by ras oncogene. (PubMed id 10391127) 1, 3 , 4 Contente S.... Friedman R.M. (1999) Association of positional and functional candidate genes FGF1, FBN2, and LOX on 5q31 with intracranial aneurysm. (PubMed id 12750963) 1, 3 , 6 Yoneyama T....Inoue I. (2003) Interaction of collagen-related genes and susceptibility to betel quid-induced oral submucous fibrosis. (PubMed id 12101112) 1, 3 , 6 Chiu C.J....Chen C.J. (2002) Congenital cutis laxa and lysyl oxidase deficiency. (PubMed id 9111998) 1, 3 , 4 Khakoo A.... Pope F.M. (1997) Mutations in the lysyl oxidase gene are not associated with amyotrophic lateral sclerosis. (PubMed id 11675877) 1, 3 , 6 Chioza B.A....Radunovic A. (2001) A restriction fragment length polymorphism results in a nonconservative amino acid substitution encoded within the first exon of the human lysyl oxidase gene. (PubMed id 8100215) 1, 3 , 4 Csiszar K.... Boyd C.D. (1993) Structure of the human lysyl oxidase gene. (PubMed id 7902322) 1, 3 , 4 Haemaelaeinen E.-R.... Kivirikko K.I. (1993) The complete derived amino acid sequence of human lysyl oxidase and assignment of the gene to chromosome 5 (extensive sequence homology with the murine ras recision gene). (PubMed id 1357535) 1, 3 , 4 Mariani T.J.... Deak S.B. (1992) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3 , 4 Gerhard D.S....Malek J. (2004)
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User Feedback Patent Information for LOX gene: Search GeneIP for patents involving LOX GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search Services for LOX gene (Reagents available from Applied Biosystems , Antibodies and assays by Cell
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