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Aliases for LONRF2 Gene

Aliases for LONRF2 Gene

  • LON Peptidase N-Terminal Domain And Ring Finger 2 2 3
  • Neuroblastoma Apoptosis-Related Protease 3 4
  • RING Finger Protein 192 3 4
  • RNF192 3 4
  • LON Peptidase N-Terminal Domain And RING Finger Protein 2 3

External Ids for LONRF2 Gene

Summaries for LONRF2 Gene

GeneCards Summary for LONRF2 Gene

LONRF2 (LON Peptidase N-Terminal Domain And Ring Finger 2) is a Protein Coding gene. Diseases associated with LONRF2 include neuroblastoma. GO annotations related to this gene include ATP-dependent peptidase activity. An important paralog of this gene is LONRF3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LONRF2 Gene

Genomics for LONRF2 Gene

Genomic Location for LONRF2 Gene

Start:
100,273,291 bp from pter
End:
100,322,733 bp from pter
Size:
49,443 bases
Orientation:
Minus strand

Genomic View for LONRF2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LONRF2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LONRF2 Gene

Regulatory Elements for LONRF2 Gene

Proteins for LONRF2 Gene

  • Protein details for LONRF2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q1L5Z9-LONF2_HUMAN
    Recommended name:
    LON peptidase N-terminal domain and RING finger protein 2
    Protein Accession:
    Q1L5Z9
    Secondary Accessions:
    • B9A006
    • Q6ZSR4

    Protein attributes for LONRF2 Gene

    Size:
    754 amino acids
    Molecular mass:
    83654 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for LONRF2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LONRF2 Gene

Proteomics data for LONRF2 Gene at MOPED

Post-translational modifications for LONRF2 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys489

Other Protein References for LONRF2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LONRF2 Gene

Domains for LONRF2 Gene

Gene Families for LONRF2 Gene

HGNC:
  • RNF :RING-type (C3HC4) zinc fingers

Suggested Antigen Peptide Sequences for LONRF2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q1L5Z9

UniProtKB/Swiss-Prot:

LONF2_HUMAN
Domain:
  • Contains 1 Lon domain.:
    • Q1L5Z9
Similarity:
  • Contains 1 RING-type zinc finger.:
    • Q1L5Z9
  • Contains 6 TPR repeats.:
    • Q1L5Z9
genes like me logo Genes that share domains with LONRF2: view

Function for LONRF2 Gene

Gene Ontology (GO) - Molecular Function for LONRF2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004176 ATP-dependent peptidase activity IEA --
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
GO:0046872 metal ion binding --
genes like me logo Genes that share ontologies with LONRF2: view

miRNA for LONRF2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for LONRF2 Gene

Localization for LONRF2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LONRF2 Gene COMPARTMENTS Subcellular localization image for LONRF2 gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for LONRF2 Gene

Pathways for LONRF2 Gene

SuperPathways for LONRF2 Gene

No Data Available

Interacting Proteins for LONRF2 Gene

Gene Ontology (GO) - Biological Process for LONRF2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006200 obsolete ATP catabolic process --
GO:0006508 proteolysis IEA --
genes like me logo Genes that share ontologies with LONRF2: view

No data available for Pathways by source for LONRF2 Gene

Transcripts for LONRF2 Gene

mRNA/cDNA for LONRF2 Gene

(2) REFSEQ mRNAs :
(12) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LONRF2 Gene

LON peptidase N-terminal domain and ring finger 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LONRF2 Gene

No ASD Table

Relevant External Links for LONRF2 Gene

GeneLoc Exon Structure for
LONRF2
ECgene alternative splicing isoforms for
LONRF2

Expression for LONRF2 Gene

mRNA expression in normal human tissues for LONRF2 Gene

mRNA differential expression in normal tissues according to GTEx for LONRF2 Gene

This gene is overexpressed in Fallopian Tube (4.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for LONRF2 Gene

SOURCE GeneReport for Unigene cluster for LONRF2 Gene Hs.21380

genes like me logo Genes that share expressions with LONRF2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for LONRF2 Gene

Orthologs for LONRF2 Gene

This gene was present in the common ancestor of animals.

Orthologs for LONRF2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LONRF2 35
  • 99.41 (n)
  • 99.61 (a)
LONRF2 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LONRF2 35
  • 79.37 (n)
  • 73.88 (a)
LONRF2 36
  • 55 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LONRF2 35
  • 85.32 (n)
  • 85.23 (a)
LONRF2 36
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Lonrf2 35
  • 79.41 (n)
  • 80.2 (a)
Lonrf2 16
Lonrf2 36
  • 78 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia LONRF2 36
  • 56 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia LONRF2 36
  • 57 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Lonrf2 35
  • 80.19 (n)
  • 80.06 (a)
chicken
(Gallus gallus)
Aves LONRF2 35
  • 69.49 (n)
  • 63.19 (a)
LONRF2 36
  • 49 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia LONRF2 36
  • 53 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia lonrf2 35
  • 59.36 (n)
  • 53.89 (a)
zebrafish
(Danio rerio)
Actinopterygii LONRF2 36
  • 51 (a)
OneToOne
si:ch1073-440b2.1 35
  • 58.28 (n)
  • 54.3 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG32369 36
  • 19 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 16 (a)
OneToMany
Species with no ortholog for LONRF2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LONRF2 Gene

ENSEMBL:
Gene Tree for LONRF2 (if available)
TreeFam:
Gene Tree for LONRF2 (if available)

Paralogs for LONRF2 Gene

Paralogs for LONRF2 Gene

Selected SIMAP similar genes for LONRF2 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with LONRF2: view

Variants for LONRF2 Gene

Sequence variations from dbSNP and Humsavar for LONRF2 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs764828 -- 100,292,172(-) GCGCC(G/T)CCAGT intron-variant
rs764829 -- 100,292,046(-) GGGGA(C/T)GTGTA intron-variant
rs920269 -- 100,301,901(-) CTTGT(C/T)AAAAT intron-variant
rs920270 -- 100,301,499(-) CTGCA(A/G)GGCCA intron-variant
rs995110 -- 100,314,040(-) atatg(C/T)cagaa intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LONRF2 Gene

Variant ID Type Subtype PubMed ID
nsv834311 CNV Gain+Loss 17160897
esv2675961 CNV Deletion 23128226
esv2053654 CNV Deletion 18987734
dgv652e201 CNV Deletion 23290073
esv2720436 CNV Deletion 23290073

Relevant External Links for LONRF2 Gene

HapMap Linkage Disequilibrium report
LONRF2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LONRF2 Gene

Disorders for LONRF2 Gene

(1) MalaCards Diseases for LONRF2 Gene

Search for LONRF2 Gene in MalaCards »

Relevant External Links for LONRF2

Genetic Association Database (GAD)
LONRF2
Human Genome Epidemiology (HuGE) Navigator
LONRF2
genes like me logo Genes that share disorders with LONRF2: view

No data available for UniProtKB/Swiss-Prot for LONRF2 Gene

Publications for LONRF2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PMID: 19240061) Trynka G. … Wijmenga C. (Gut 2009) 3 48
  4. Defining the human deubiquitinating enzyme interaction landscape. (PMID: 19615732) Sowa M.E. … Harper J.W. (Cell 2009) 3
  5. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PMID: 21890473) Wagner S.A. … Choudhary C. (Mol. Cell Proteomics 2011) 3

Products for LONRF2 Gene

Sources for LONRF2 Gene

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