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Aliases for LOC93429 Gene

Subcategory (RNA class) for LOC93429 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC93429 Gene

  • Uncharacterized LOC93429 3
  • AC006262.6 5

External Ids for LOC93429 Gene

Summaries for LOC93429 Gene

GeneCards Summary for LOC93429 Gene

LOC93429 (Uncharacterized LOC93429) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC93429 Gene

Genomics for LOC93429 Gene

Regulatory Elements for LOC93429 Gene

Enhancers for LOC93429 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G046131 1.5 Ensembl ENCODE dbSUPER 29.8 -70.2 -70205 3.7 HDGF PKNOX1 ATF1 FEZF1 TCF12 ZNF121 GLIS2 ELK1 SP3 YY2 ZC3H4 CCDC61 LOC93429 ENSG00000268810 ENSG00000269148 FBXO46 IGFL3 SLC1A5 PPP5D1 IRF2BP1
GH19G046200 1.5 Ensembl ENCODE dbSUPER 15 -0.8 -776 4.0 PKNOX1 ATF1 ARNT AGO1 YY1 TCF12 ZNF121 ZNF766 ELK1 ZNF143 LOC93429 IRF2BP1 IGFL1 IGFL2 HIF3A IGFL2-AS1 IGFL1P1
GH19G046210 1.5 Ensembl ENCODE dbSUPER 14.4 +8.3 8255 2.3 HDGF PKNOX1 ATF1 ARID4B SIN3A DMAP1 ZNF48 GLIS2 ZNF143 FOS LOC93429 ZC3H4 ENSG00000268810 CCDC61 IGFL2-AS1 RPL12P41
GH19G046221 1.3 Ensembl ENCODE dbSUPER 14.3 +18.8 18766 1.3 KLF1 TEAD4 SIN3A ZIC2 CTBP1 POLR2A RCOR1 FOS ZNF600 MAFK IGFL4 LOC105372421 LOC93429 PPP5D1 RPL12P41 PIR58292 IGFL1
GH19G046205 1 ENCODE dbSUPER 14.7 +2.9 2889 1.9 KLF1 NFRKB TEAD4 MAX ZFHX2 ZNF766 KDM5B EGR2 ZNF680 MAZ LOC93429 IGFL1 IGFL2-AS1 RPL12P41
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC93429 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC93429 Gene

Chromosome:
19
Start:
46,203,426 bp from pter
End:
46,214,838 bp from pter
Size:
11,413 bases
Orientation:
Plus strand

Genomic View for LOC93429 Gene

Genes around LOC93429 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC93429 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC93429 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC93429 Gene

Proteins for LOC93429 Gene

Post-translational modifications for LOC93429 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC93429 Gene

Domains & Families for LOC93429 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC93429 Gene

Function for LOC93429 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC93429 Gene

Localization for LOC93429 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC93429 Gene

Pathways & Interactions for LOC93429 Gene

SuperPathways for LOC93429 Gene

No Data Available

Interacting Proteins for LOC93429 Gene

Gene Ontology (GO) - Biological Process for LOC93429 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC93429 Gene

Drugs & Compounds for LOC93429 Gene

No Compound Related Data Available

Transcripts for LOC93429 Gene

mRNA/cDNA for LOC93429 Gene

(3) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC93429 Gene

No ASD Table

Relevant External Links for LOC93429 Gene

GeneLoc Exon Structure for
LOC93429

Expression for LOC93429 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC93429 Gene

Orthologs for LOC93429 Gene

Evolution for LOC93429 Gene

ENSEMBL:
Gene Tree for LOC93429 (if available)
TreeFam:
Gene Tree for LOC93429 (if available)

No data available for Orthologs for LOC93429 Gene

Paralogs for LOC93429 Gene

No data available for Paralogs for LOC93429 Gene

Variants for LOC93429 Gene

Sequence variations from dbSNP and Humsavar for LOC93429 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000056862 -- 46,211,173(+) CTCCT(C/T)CAGCC intron-variant
rs1000254686 -- 46,208,566(+) TCTGT(A/C)TTGCC upstream-variant-2KB
rs1000520203 -- 46,213,701(+) CCATA(C/T)CGAGC intron-variant
rs1000690021 -- 46,208,780(+) TTCAC(C/T)CTCCA upstream-variant-2KB
rs1001018213 -- 46,208,724(+) TTCCC(A/G)GCTCG upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC93429 Gene

Disorders for LOC93429 Gene

Relevant External Links for LOC93429

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC93429

No disorders were found for LOC93429 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC93429 Gene

Publications for LOC93429 Gene

  1. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. (PMID: 15790807) Cheng J. … Gingeras T.R. (Science 2005) 3 64
  2. Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution. (PMID: 11441184) Dehal P. … Stubbs L. (Science 2001) 3 64

Products for LOC93429 Gene

Sources for LOC93429 Gene

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