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Aliases for LOC93429 Gene

Subcategory (RNA class) for LOC93429 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC93429 Gene

  • Uncharacterized LOC93429 3
  • AC006262.6 5

External Ids for LOC93429 Gene

Summaries for LOC93429 Gene

GeneCards Summary for LOC93429 Gene

LOC93429 (Uncharacterized LOC93429) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC93429 Gene

Genomics for LOC93429 Gene

Regulatory Elements for LOC93429 Gene

Enhancers for LOC93429 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F046131 1.3 Ensembl ENCODE 29.8 -70.3 -70251 3.7 HDGF PKNOX1 ATF1 FEZF1 ZNF121 GLIS2 SP3 YY2 NCOA1 REST ZC3H4 LOC93429 CCDC61 ENSG00000269148 FBXO46 IGFL3 SLC1A5 IRF2BP1 ENSG00000268810 ENSG00000266958
GH19F045453 1.7 FANTOM5 Ensembl ENCODE 11.6 -748.1 -748071 4.5 MLX ARID4B SIN3A DMAP1 ZNF2 FOS SP3 SP5 JUNB MXD4 CCDC61 ZNF180 CD3EAP FOSB FBXO46 ENSG00000269148 PPP1R13L IGFL4 LOC93429 IRF2BP1
GH19F046210 1.3 Ensembl ENCODE 14.4 +8.2 8188 2.4 HDGF ATF1 PKNOX1 ARID4B SIN3A DMAP1 ZNF48 GLIS2 ZNF143 FOS LOC93429 IGFL2-AS1 RPL12P41
GH19F046200 1.2 Ensembl ENCODE 15 -0.8 -776 4.0 ATF1 PKNOX1 ARNT ZNF121 ELK1 ZNF143 FOS REST SMARCB1 CREB3 LOC93429 IRF2BP1 ENSG00000268810 ZC3H4 IGFL1 QPCTL IGFL2 HIF3A IGFL2-AS1 IGFL1P1
GH19F045401 1.5 FANTOM5 ENCODE 11.6 -798.9 -798854 6.2 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 YY1 ZNF207 ZNF180 CD3EAP ENSG00000259605 CCDC61 ENSG00000267395 ERCC1 ENSG00000268810 EXOC3L2 RPS16P9 ENSG00000267614
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC93429 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC93429 Gene

Chromosome:
19
Start:
46,203,426 bp from pter
End:
46,214,838 bp from pter
Size:
11,413 bases
Orientation:
Plus strand

Genomic View for LOC93429 Gene

Genes around LOC93429 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC93429 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC93429 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC93429 Gene

Proteins for LOC93429 Gene

Post-translational modifications for LOC93429 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC93429 Gene

Domains & Families for LOC93429 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC93429 Gene

Function for LOC93429 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC93429 Gene

Localization for LOC93429 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC93429 Gene

Pathways & Interactions for LOC93429 Gene

SuperPathways for LOC93429 Gene

No Data Available

Interacting Proteins for LOC93429 Gene

Gene Ontology (GO) - Biological Process for LOC93429 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC93429 Gene

Transcripts for LOC93429 Gene

mRNA/cDNA for LOC93429 Gene

(2) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC93429 Gene

Uncharacterized LOC93429:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC93429 Gene

No ASD Table

Relevant External Links for LOC93429 Gene

GeneLoc Exon Structure for
LOC93429

Expression for LOC93429 Gene

SOURCE GeneReport for Unigene cluster for LOC93429 Gene:

Hs.569940
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LOC93429 Gene

Orthologs for LOC93429 Gene

Evolution for LOC93429 Gene

ENSEMBL:
Gene Tree for LOC93429 (if available)
TreeFam:
Gene Tree for LOC93429 (if available)

No data available for Orthologs for LOC93429 Gene

Paralogs for LOC93429 Gene

No data available for Paralogs for LOC93429 Gene

Variants for LOC93429 Gene

Sequence variations from dbSNP and Humsavar for LOC93429 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs112182436 -- 46,213,239(+) GAAGC(A/G)GAGGG intron-variant
rs112368956 -- 46,214,739(+) GAGCC(A/G)TCCAG nc-transcript-variant
rs112736968 -- 46,209,194(+) TAAAT(A/G)AATGA upstream-variant-2KB
rs113308949 -- 46,212,238(+) AGGTG(C/T)GTGCT intron-variant
rs113594271 -- 46,210,207(+) ATCCA(C/T)GGTGC upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC93429 Gene

Disorders for LOC93429 Gene

Relevant External Links for LOC93429

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC93429

No disorders were found for LOC93429 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC93429 Gene

Publications for LOC93429 Gene

  1. Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution. (PMID: 15790807) Cheng J. … Gingeras T.R. (Science 2005) 3 64
  2. Human chromosome 19 and related regions in mouse: conservative and lineage-specific evolution. (PMID: 11441184) Dehal P. … Stubbs L. (Science 2001) 3 64

Products for LOC93429 Gene

Sources for LOC93429 Gene

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