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Aliases for LOC729603 Gene

Subcategory (RNA class) for LOC729603 Gene

lncRNA

Aliases for LOC729603 Gene

  • Calcineurin Like EF-Hand Protein 1 Pseudogene 3
  • AL353625.1 5

External Ids for LOC729603 Gene

ORGUL Members for LOC729603 Gene

Previous GeneCards Identifiers for LOC729603 Gene

  • GC06P160434
  • GC06P160515

Summaries for LOC729603 Gene

Entrez Gene Summary for LOC729603 Gene

  • This locus on chromosome 6q25.3 represents a single-exon transcribed pseudogene of the multi-exon calcium binding protein P22 gene which resides on chromosome 15q13.3. This pseudogene is situated within an intron region of the insulin-like growth factor 2 receptor gene (IGF2R). [provided by RefSeq, Jan 2009]

GeneCards Summary for LOC729603 Gene

LOC729603 (Calcineurin Like EF-Hand Protein 1 Pseudogene) is a Pseudogene, and is affiliated with the lncRNA class.

Additional gene information for LOC729603 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC729603 Gene

Genomics for LOC729603 Gene

Regulatory Elements for LOC729603 Gene

Enhancers for LOC729603 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H159972 1.9 FANTOM5 Ensembl ENCODE dbSUPER 5 -119.2 -119187 3 PKNOX1 ATF1 ARNT FEZF1 DMAP1 YY1 TCF12 ZNF766 GATA2 FOS IGF2R WTAP SOD2 SLC22A1 LOC729603 MAS1 AIRN
GH06H159958 1.6 FANTOM5 Ensembl ENCODE dbSUPER 5.9 -133.2 -133183 1 BACH1 ZMYM3 RELA ZNF316 GATA2 NFE2 IKZF2 MAFK L3MBTL2 MAFG MAS1 ENSG00000236823 LOC729603 SOD2 WTAP IGF2R LOC105378087
GH06H160088 0.6 ENCODE 13.7 -3.1 -3095 3 CTCF HLF SMC3 FOS HNF4A REST RAD21 SLC22A1 LOC729603 MAS1 ENSG00000236823 GC06P160076 PIR43380
GH06H159966 1.6 Ensembl ENCODE dbSUPER 4.9 -124.4 -124355 5 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 IGF2R MAS1 ENSG00000236823 SLC22A1 LOC729603 LOC105378087
GH06H160876 0.7 ENCODE 11 +784.4 784420 1 ZNF202 ZFP64 ZC3H11A ZNF140 ZNF266 ZBTB8A ZNF781 ZNF518A ZNF697 ZNF555 MAP3K4 LOC729603 ENSG00000233342 ENSG00000220913 LOC105378091
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC729603 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC729603 Gene

Chromosome:
6
Start:
160,093,082 bp from pter
End:
160,096,212 bp from pter
Size:
3,131 bases
Orientation:
Plus strand

Genomic View for LOC729603 Gene

Genes around LOC729603 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC729603 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC729603 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC729603 Gene

Proteins for LOC729603 Gene

Post-translational modifications for LOC729603 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC729603 Gene

Domains & Families for LOC729603 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC729603 Gene

Function for LOC729603 Gene

Phenotypes From GWAS Catalog for LOC729603 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for LOC729603
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC729603 Gene

Localization for LOC729603 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC729603 Gene

Pathways & Interactions for LOC729603 Gene

SuperPathways for LOC729603 Gene

No Data Available

Interacting Proteins for LOC729603 Gene

Gene Ontology (GO) - Biological Process for LOC729603 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC729603 Gene

Drugs & Compounds for LOC729603 Gene

No Compound Related Data Available

Transcripts for LOC729603 Gene

mRNA/cDNA for LOC729603 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC729603 Gene

Calcium binding protein P22 pseudogene:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for LOC729603
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for LOC729603 Gene

No ASD Table

Relevant External Links for LOC729603 Gene

GeneLoc Exon Structure for
LOC729603

Expression for LOC729603 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC729603 Gene

mRNA differential expression in normal tissues according to GTEx for LOC729603 Gene

This gene is overexpressed in Whole Blood (x6.5).

SOURCE GeneReport for Unigene cluster for LOC729603 Gene:

Hs.674810
genes like me logo Genes that share expression patterns with LOC729603: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC729603 Gene

Orthologs for LOC729603 Gene

Evolution for LOC729603 Gene

ENSEMBL:
Gene Tree for LOC729603 (if available)
TreeFam:
Gene Tree for LOC729603 (if available)

No data available for Orthologs for LOC729603 Gene

Paralogs for LOC729603 Gene

No data available for Paralogs for LOC729603 Gene

Variants for LOC729603 Gene

Sequence variations from dbSNP and Humsavar for LOC729603 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs8191933 Benign 160,096,440(+) ACAGA(C/T)GGCGA downstream-variant-500B, reference, synonymous-codon
rs1000796301 -- 160,095,476(+) TCTTT(A/G)TGAAT intron-variant, nc-transcript-variant
rs1002413410 -- 160,095,990(+) TTGGA(C/T)TTTGT intron-variant, nc-transcript-variant
rs1002967830 -- 160,095,164(+) TGACT(A/G)TTCAA intron-variant, nc-transcript-variant
rs1003346740 -- 160,094,129(+) ACAAC(C/G)CCAAA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC729603 Gene

Variant ID Type Subtype PubMed ID
esv2759484 CNV gain+loss 17122850
esv35098 CNV gain 17911159
esv3611425 CNV gain 21293372
nsv818463 CNV gain 17921354

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC729603 Gene

Disorders for LOC729603 Gene

Relevant External Links for LOC729603

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC729603

No disorders were found for LOC729603 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC729603 Gene

Publications for LOC729603 Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LOC729603 Gene

Sources for LOC729603 Gene

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