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Aliases for LOC728763 Gene

Aliases for LOC728763 Gene

  • Rootletin-Like 3

External Ids for LOC728763 Gene

Previous GeneCards Identifiers for LOC728763 Gene

  • GC02P241517
  • GC02P241847
  • GC02P241868

Summaries for LOC728763 Gene

GeneCards Summary for LOC728763 Gene

LOC728763 (Rootletin-Like) is a Protein Coding gene. An important paralog of this gene is CEP250.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC728763 Gene

Genomics for LOC728763 Gene

Regulatory Elements for LOC728763 Gene

Genomic Location for LOC728763 Gene

Start:
240,906,330 bp from pter
End:
240,993,311 bp from pter
Size:
86,982 bases
Orientation:
Plus strand

Genomic View for LOC728763 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LOC728763 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC728763 Gene

Proteins for LOC728763 Gene

Post-translational modifications for LOC728763 Gene

No Post-translational modifications

Other Protein References for LOC728763 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for LOC728763 Gene

Domains for LOC728763 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC728763 Gene

Function for LOC728763 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LOC728763 Gene

Localization for LOC728763 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC728763 Gene

Pathways for LOC728763 Gene

SuperPathways for LOC728763 Gene

No Data Available

Interacting Proteins for LOC728763 Gene

Gene Ontology (GO) - Biological Process for LOC728763 Gene

None

No data available for Pathways by source for LOC728763 Gene

Transcripts for LOC728763 Gene

mRNA/cDNA for LOC728763 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC728763 Gene

Rootletin-like:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LOC728763
    • Block miRNA regulation of LOC728763 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for LOC728763

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for LOC728763 Gene

    No ASD Table

    Relevant External Links for LOC728763 Gene

    GeneLoc Exon Structure for
    LOC728763

    Expression for LOC728763 Gene

    mRNA expression in normal human tissues for LOC728763 Gene

    mRNA differential expression in normal tissues according to GTEx for LOC728763 Gene

    This gene is overexpressed in Fallopian Tube (13.8), Cervix - Endocervix (9.2), Spleen (5.5), and Lung (5.0).

    Integrated Proteomics: protein expression from for LOC728763 Gene

    SOURCE GeneReport for Unigene cluster for LOC728763 Gene Hs.647892

    genes like me logo Genes that share expressions with LOC728763: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for LOC728763 Gene

    Orthologs for LOC728763 Gene

    This gene was present in the common ancestor of animals.

    Orthologs for LOC728763 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia -- 36
    • 95 (a)
    OneToOne
    cow
    (Bos Taurus)
    Mammalia -- 36
    • 43 (a)
    OneToOne
    dog
    (Canis familiaris)
    Mammalia -- 36
    • 39 (a)
    OneToOne
    mouse
    (Mus musculus)
    Mammalia E030010N08Rik 35
    • 70.45 (n)
    • 62.69 (a)
    oppossum
    (Monodelphis domestica)
    Mammalia -- 36
    • 26 (a)
    OneToOne
    platypus
    (Ornithorhynchus anatinus)
    Mammalia -- 36
    • 24 (a)
    OneToOne
    rat
    (Rattus norvegicus)
    Mammalia LOC102551034 35
    • 74.27 (n)
    • 68.24 (a)
    chicken
    (Gallus gallus)
    Aves -- 36
    • 10 (a)
    ManyToMany
    lizard
    (Anolis carolinensis)
    Reptilia -- 36
    • 24 (a)
    OneToOne
    zebrafish
    (Danio rerio)
    Actinopterygii si:ch211-95g8.1 36
    • 17 (a)
    OneToOne
    fruit fly
    (Drosophila melanogaster)
    Insecta Rootletin 36
    • 9 (a)
    OneToMany
    sea squirt
    (Ciona savignyi)
    Ascidiacea -- 36
    • 15 (a)
    OneToOne
    Species with no ortholog for LOC728763:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • rainbow trout (Oncorhynchus mykiss)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)

    Evolution for LOC728763 Gene

    ENSEMBL:
    Gene Tree for LOC728763 (if available)
    TreeFam:
    Gene Tree for LOC728763 (if available)

    Paralogs for LOC728763 Gene

    Paralogs for LOC728763 Gene

    Selected SIMAP similar genes for LOC728763 Gene using alignment to 6 proteins:

    genes like me logo Genes that share paralogs with LOC728763: view

    Variants for LOC728763 Gene

    Sequence variations from dbSNP and Humsavar for LOC728763 Gene

    SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
    rs3922986 -- 240,988,657(-) CAGGG(A/T)TGCCT intron-variant
    rs3922987 -- 240,988,420(-) TACCC(C/T)GCAAA intron-variant
    rs3934763 -- 240,970,510(-) AAAGA(C/G)GATGA intron-variant
    rs3935136 -- 240,934,216(-) AGGAG(A/G)AGCAT intron-variant
    rs4072370 -- 240,970,226(-) TTAAC(C/T)GAGAA intron-variant

    Relevant External Links for LOC728763 Gene

    HapMap Linkage Disequilibrium report
    LOC728763

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LOC728763 Gene

    Disorders for LOC728763 Gene

    No disorders were found for LOC728763 Gene.

    No data available for UniProtKB/Swiss-Prot for LOC728763 Gene

    Publications for LOC728763 Gene

    No publications were found for LOC728763 Gene.

    Products for LOC728763 Gene

    Sources for LOC728763 Gene

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