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Aliases for LOC728048 Gene

Aliases for LOC728048 Gene

  • Interferon Induced Transmembrane Protein Pseudogene 3
  • RP11-396M11.1 5

External Ids for LOC728048 Gene

Previous GeneCards Identifiers for LOC728048 Gene

  • GC04P066642
  • GC04P066960

Summaries for LOC728048 Gene

GeneCards Summary for LOC728048 Gene

LOC728048 (Interferon Induced Transmembrane Protein Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC728048 Gene

Genomics for LOC728048 Gene

Regulatory Elements for LOC728048 Gene

Enhancers for LOC728048 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G066094 0.5 FANTOM5 0.7 +0.9 888 0.2 FOS LOC728048 GC04P066168
GH04G066123 0.5 VISTA 0.3 +30.1 30136 0.9 EPHA5 LOC728048 GC04P066168
GH04G066095 0.2 Ensembl 0.7 +0.3 331 0.4 EPHA5 LOC728048 GC04P066168
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC728048 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC728048 Gene

Chromosome:
4
Start:
66,094,070 bp from pter
End:
66,094,686 bp from pter
Size:
617 bases
Orientation:
Plus strand

Genomic View for LOC728048 Gene

Genes around LOC728048 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC728048 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC728048 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC728048 Gene

Proteins for LOC728048 Gene

Post-translational modifications for LOC728048 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC728048 Gene

Domains & Families for LOC728048 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC728048 Gene

Function for LOC728048 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC728048 Gene

Localization for LOC728048 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC728048 Gene

Pathways & Interactions for LOC728048 Gene

SuperPathways for LOC728048 Gene

No Data Available

Interacting Proteins for LOC728048 Gene

Gene Ontology (GO) - Biological Process for LOC728048 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC728048 Gene

Drugs & Compounds for LOC728048 Gene

No Compound Related Data Available

Transcripts for LOC728048 Gene

mRNA/cDNA for LOC728048 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC728048 Gene

No ASD Table

Relevant External Links for LOC728048 Gene

GeneLoc Exon Structure for
LOC728048

Expression for LOC728048 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC728048 Gene

mRNA differential expression in normal tissues according to GTEx for LOC728048 Gene

This gene is overexpressed in Whole Blood (x39.5).
genes like me logo Genes that share expression patterns with LOC728048: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC728048 Gene

Orthologs for LOC728048 Gene

Evolution for LOC728048 Gene

ENSEMBL:
Gene Tree for LOC728048 (if available)
TreeFam:
Gene Tree for LOC728048 (if available)

No data available for Orthologs for LOC728048 Gene

Paralogs for LOC728048 Gene

No data available for Paralogs for LOC728048 Gene

Variants for LOC728048 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC728048 Gene

Disorders for LOC728048 Gene

No disorders were found for LOC728048 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC728048 Gene

Publications for LOC728048 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  2. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 64

Products for LOC728048 Gene

Sources for LOC728048 Gene

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