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Aliases for LOC654841 Gene

Subcategory (RNA class) for LOC654841 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC654841 Gene

  • Uncharacterized LOC654841 3
  • AC097662.2 5

External Ids for LOC654841 Gene

Previous GeneCards Identifiers for LOC654841 Gene

  • GC02U900990
  • GC02M228086

Summaries for LOC654841 Gene

GeneCards Summary for LOC654841 Gene

LOC654841 (Uncharacterized LOC654841) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC654841 Gene

Genomics for LOC654841 Gene

Regulatory Elements for LOC654841 Gene

Enhancers for LOC654841 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G227370 1.5 FANTOM5 Ensembl ENCODE dbSUPER 7.5 -45.9 -45908 2.1 STAT1 CHD4 JUND ETV4 CEBPA TCF7 KDM1A MAFK MFF AGFG1 LOC654841 CCL20 TM4SF20 STIP1P2
GH02G227324 1.4 ENCODE dbSUPER 7.3 -0.7 -741 3.1 HNRNPUL1 MLX CREB3L1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B MFF LOC654841 STIP1P2
GH02G227311 0.8 dbSUPER 5.6 +12.4 12437 3.0 CTCF SOX13 FOXA2 ATF1 ARID4B DMAP1 TEAD3 NCOR1 CREM MAFK MFF AGFG1 COL4A3 CCL20 LOC654841 GC02P227300
GH02G227376 0.4 ENCODE 4.7 -50.9 -50911 0.1 ATF2 AGFG1 LOC654841 TM4SF20 STIP1P2
GH02G227327 0.2 Ensembl 0.7 -2.7 -2700 0.2 LOC654841 STIP1P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC654841 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC654841 Gene

Chromosome:
2
Start:
227,221,052 bp from pter
End:
227,325,201 bp from pter
Size:
104,150 bases
Orientation:
Minus strand

Genomic View for LOC654841 Gene

Genes around LOC654841 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC654841 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC654841 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC654841 Gene

Proteins for LOC654841 Gene

Post-translational modifications for LOC654841 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC654841 Gene

Domains & Families for LOC654841 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC654841 Gene

Function for LOC654841 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC654841 Gene

Localization for LOC654841 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC654841 Gene

Pathways & Interactions for LOC654841 Gene

SuperPathways for LOC654841 Gene

No Data Available

Interacting Proteins for LOC654841 Gene

Gene Ontology (GO) - Biological Process for LOC654841 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC654841 Gene

Drugs & Compounds for LOC654841 Gene

No Compound Related Data Available

Transcripts for LOC654841 Gene

mRNA/cDNA for LOC654841 Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC654841 Gene

Uncharacterized LOC654841:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC654841 Gene

No ASD Table

Relevant External Links for LOC654841 Gene

GeneLoc Exon Structure for
LOC654841

Expression for LOC654841 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC654841 Gene

SOURCE GeneReport for Unigene cluster for LOC654841 Gene:

Hs.659982
genes like me logo Genes that share expression patterns with LOC654841: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC654841 Gene

Orthologs for LOC654841 Gene

Evolution for LOC654841 Gene

ENSEMBL:
Gene Tree for LOC654841 (if available)
TreeFam:
Gene Tree for LOC654841 (if available)

No data available for Orthologs for LOC654841 Gene

Paralogs for LOC654841 Gene

No data available for Paralogs for LOC654841 Gene

Variants for LOC654841 Gene

Sequence variations from dbSNP and Humsavar for LOC654841 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1057516204 Pathogenic 227,293,224(+) GAAAG(-/AAAG)GAGAA intron-variant, nc-transcript-variant, reference, utr-variant-3-prime, frameshift-variant
rs1057519376 Pathogenic 227,257,613(+) GAAAG(C/G)GGACA intron-variant, nc-transcript-variant, reference, missense, utr-variant-5-prime
rs1057519377 Pathogenic 227,308,910(+) TTGGC(A/T)GCTGC intron-variant, reference, missense
rs121912824 Pathogenic 227,307,898(+) ATCAA(C/T)GAGCC intron-variant, nc-transcript-variant, reference, stop-gained
rs121912825 Pathogenic 227,309,007(+) GCTGT(C/G)AACAC intron-variant, reference, stop-gained

Structural Variations from Database of Genomic Variants (DGV) for LOC654841 Gene

Variant ID Type Subtype PubMed ID
esv3584367 CNV loss 25503493
esv3594531 CNV loss 21293372
nsv1131556 CNV deletion 24896259
nsv478537 CNV novel sequence insertion 20440878
nsv521800 CNV loss 19592680
nsv584594 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC654841 Gene

Disorders for LOC654841 Gene

Relevant External Links for LOC654841

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC654841

No disorders were found for LOC654841 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC654841 Gene

Publications for LOC654841 Gene

  1. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx J.J. … Ophoff R.A. (Mol. Psychiatry 2013) 3 64
  2. Genome-wide association analyses identify multiple loci associated with central corneal thickness and keratoconus. (PMID: 23291589) Lu Y. … Wong T.Y. (Nat. Genet. 2013) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC654841 Gene

Sources for LOC654841 Gene

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