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Aliases for LOC646853 Gene

Aliases for LOC646853 Gene

  • Non-Histone Chromosomal Protein HMG-17 Pseudogene 3
  • AC060773.1 5

External Ids for LOC646853 Gene

Previous GeneCards Identifiers for LOC646853 Gene

  • GC15P075358
  • GC15P077571

Summaries for LOC646853 Gene

GeneCards Summary for LOC646853 Gene

LOC646853 (Non-Histone Chromosomal Protein HMG-17 Pseudogene) is a Pseudogene.

Additional gene information for LOC646853 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC646853 Gene

Genomics for LOC646853 Gene

GeneHancer (GH) Regulatory Elements for LOC646853 Gene

Promoters and enhancers for LOC646853 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I077266 Enhancer 0.6 ENCODE 0.4 -11.4 -11434 1.2 ZIC2 ZNF316 ZFHX2 GLIS1 FOS WT1 EMSY ZBTB17 EGR2 LOC646853 LINC00597 PEAK1
GH15I077252 Promoter 0.5 EPDnew 0.3 -25.9 -25912 0.1 PEAK1 LINC00597 LOC646853
GH15I077225 Enhancer 0.4 ENCODE 0.2 -51.7 -51693 1.5 NFIL3 CEBPA LINC00597 LOC101929457 GC15P077220 LOC646853 PEAK1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC646853 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC646853 gene promoter:

Genomic Locations for LOC646853 Gene

Genomic Locations for LOC646853 Gene
chr15:77,278,379-77,279,850
(GRCh38/hg38)
Size:
1,472 bases
Orientation:
Plus strand
chr15:77,570,721-77,572,192
(GRCh37/hg19)

Genomic View for LOC646853 Gene

Genes around LOC646853 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646853 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646853 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646853 Gene

Proteins for LOC646853 Gene

Post-translational modifications for LOC646853 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646853 Gene

Domains & Families for LOC646853 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC646853 Gene

Function for LOC646853 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646853 Gene

Localization for LOC646853 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646853 Gene

Pathways & Interactions for LOC646853 Gene

SuperPathways for LOC646853 Gene

No Data Available

Interacting Proteins for LOC646853 Gene

Gene Ontology (GO) - Biological Process for LOC646853 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC646853 Gene

Drugs & Compounds for LOC646853 Gene

No Compound Related Data Available

Transcripts for LOC646853 Gene

mRNA/cDNA for LOC646853 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646853 Gene

No ASD Table

Relevant External Links for LOC646853 Gene

GeneLoc Exon Structure for
LOC646853

Expression for LOC646853 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC646853 Gene

genes like me logo Genes that share expression patterns with LOC646853: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646853 Gene

Orthologs for LOC646853 Gene

Evolution for LOC646853 Gene

ENSEMBL:
Gene Tree for LOC646853 (if available)
TreeFam:
Gene Tree for LOC646853 (if available)

No data available for Orthologs for LOC646853 Gene

Paralogs for LOC646853 Gene

No data available for Paralogs for LOC646853 Gene

Variants for LOC646853 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC646853 Gene

Disorders for LOC646853 Gene

No disorders were found for LOC646853 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646853 Gene

Publications for LOC646853 Gene

No publications were found for LOC646853 Gene.

Products for LOC646853 Gene

Sources for LOC646853 Gene

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