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Aliases for LOC646736 Gene

Subcategory (RNA class) for LOC646736 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for LOC646736 Gene

  • Uncharacterized LOC646736 3

External Ids for LOC646736 Gene

Previous GeneCards Identifiers for LOC646736 Gene

  • GC02P226715
  • GC02U901574

Summaries for LOC646736 Gene

GeneCards Summary for LOC646736 Gene

LOC646736 (Uncharacterized LOC646736) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC646736 Gene

Genomics for LOC646736 Gene

Regulatory Elements for LOC646736 Gene

Enhancers for LOC646736 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G226135 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -5.8 -5785 2.7 ELF3 FOXA2 MAX ZNF644 GATA3 FOS MAFK U2AF2 TCF7L2 KLF11 ENSG00000235070 LOC646736 GC02P226007
GH02G226113 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -22.5 -22458 13.6 PKNOX1 FOXA2 CREB3L1 SIN3A ARID4B DMAP1 FOS SP5 ZHX2 MXD4 LOC646736 GC02P226007
GH02G226138 0.8 dbSUPER 0.7 -3.1 -3143 2.2 ELF3 SOX13 RAD21 ZNF644 RARA ZNF7 ZNF316 NCOR1 NFE2 HOMEZ ENSG00000235070 LOC646736 GC02P226007
GH02G226157 1.2 ENCODE dbSUPER 0.4 +16.8 16832 4.4 FOXA2 ATF1 MLX ZFP64 ARID4B SP5 JUNB PPARG KAT8 MIER3 ENSG00000235070 IRS1 GC02M226163 LOC646736
GH02G226151 0.9 ENCODE dbSUPER 0.4 +8.7 8727 0.6 RFX1 JUN DPF2 BMI1 RAD21 FOXA1 MBD2 CTBP1 GATA3 ELK1 LOC646736 GC02M226163
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC646736 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC646736 Gene

Chromosome:
2
Start:
226,142,794 bp from pter
End:
226,180,062 bp from pter
Size:
37,269 bases
Orientation:
Plus strand

Genomic View for LOC646736 Gene

Genes around LOC646736 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646736 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646736 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646736 Gene

Proteins for LOC646736 Gene

Post-translational modifications for LOC646736 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646736 Gene

Domains & Families for LOC646736 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC646736 Gene

Function for LOC646736 Gene

Phenotypes for LOC646736 Gene

GenomeRNAi human phenotypes for LOC646736:
genes like me logo Genes that share phenotypes with LOC646736: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646736 Gene

Localization for LOC646736 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC646736 Gene

Pathways & Interactions for LOC646736 Gene

SuperPathways for LOC646736 Gene

No Data Available

Interacting Proteins for LOC646736 Gene

Gene Ontology (GO) - Biological Process for LOC646736 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC646736 Gene

Drugs & Compounds for LOC646736 Gene

No Compound Related Data Available

Transcripts for LOC646736 Gene

mRNA/cDNA for LOC646736 Gene

(2) Additional mRNA sequences :

Unigene Clusters for LOC646736 Gene

Uncharacterized LOC646736:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646736 Gene

No ASD Table

Relevant External Links for LOC646736 Gene

GeneLoc Exon Structure for
LOC646736

Expression for LOC646736 Gene

SOURCE GeneReport for Unigene cluster for LOC646736 Gene:

Hs.712836
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646736 Gene

Orthologs for LOC646736 Gene

No data available for Orthologs and Evolution for LOC646736 Gene

Paralogs for LOC646736 Gene

No data available for Paralogs for LOC646736 Gene

Variants for LOC646736 Gene

Sequence variations from dbSNP and Humsavar for LOC646736 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000083551 -- 226,166,760(+) TTTTT(C/T)CCTAA intron-variant
rs1000087922 -- 226,178,619(+) TAAGA(G/T)TCTGG intron-variant
rs1000164021 -- 226,179,450(+) ATGCT(C/G)TGTCC intron-variant
rs1000290107 -- 226,143,933(+) TATAT(A/T)TATAT intron-variant
rs1000447007 -- 226,179,249(+) AGGCA(C/T)AGTGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC646736 Gene

Variant ID Type Subtype PubMed ID
dgv2161n106 CNV deletion 24896259
esv2278504 CNV deletion 18987734
esv2721541 CNV deletion 23290073
esv3561084 CNV deletion 23714750
esv3584365 CNV loss 25503493
nsv1072075 CNV deletion 25765185
nsv1149501 CNV deletion 26484159
nsv214476 CNV deletion 16902084
nsv525291 CNV gain 19592680
nsv584559 CNV loss 21841781
nsv954187 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC646736 Gene

Disorders for LOC646736 Gene

Relevant External Links for LOC646736

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC646736

No disorders were found for LOC646736 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC646736 Gene

Publications for LOC646736 Gene

  1. Twelve type 2 diabetes susceptibility loci identified through large-scale association analysis. (PMID: 20581827) Voight B.F. … . (Nat. Genet. 2010) 3 64
  2. Genomewide association analysis of coronary artery disease. (PMID: 17634449) Samani N.J. … Schunkert H. (N. Engl. J. Med. 2007) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC646736 Gene

Sources for LOC646736 Gene

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