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Aliases for LOC646626 Gene

Subcategory (RNA class) for LOC646626 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC646626 Gene

  • Uncharacterized LOC646626 3
  • AL078459.1 5

External Ids for LOC646626 Gene

Previous GeneCards Identifiers for LOC646626 Gene

  • GC01P085514
  • GC01P085743

Summaries for LOC646626 Gene

GeneCards Summary for LOC646626 Gene

LOC646626 (Uncharacterized LOC646626) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC646626 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC646626 Gene

Genomics for LOC646626 Gene

GeneHancer (GH) Regulatory Elements for LOC646626 Gene

Promoters and enhancers for LOC646626 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I085273 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 560.5 +0.7 686 6.9 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 SP3 NFYC MEF2D BCL10 LOC646626 C1orf52 DDAH1
GH01I085258 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10 -16.6 -16589 2.8 PKNOX1 ATF1 MLX ARID4B SIN3A DMAP1 ZNF48 YY1 ETS1 POLR2B C1orf52 LOC646626 BCL10 DDAH1 ENSG00000223254
GH01I085296 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.7 +21.9 21937 3.1 PKNOX1 FOXA2 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 ZNF213 ZNF207 DDAH1 BCL10 C1orf52 LOC646626 CYR61 GC01P085392
GH01I085198 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 4.9 -75.2 -75172 4.8 PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 YY1 POLR2B ZNF213 SYDE2 BCL10 MCOLN2 LOC646626 GC01M085174
GH01I085219 Enhancer 1 ENCODE dbSUPER 8.7 -55.6 -55632 1.6 HDAC1 PKNOX1 ZBTB40 TCF12 E2F8 SCRT2 ZNF214 NCOA1 SMARCA4 IKZF1 SAMD13 LOC646626 LOC105378821 SYDE2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC646626 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC646626 gene promoter:

Genomic Locations for LOC646626 Gene

Genomic Locations for LOC646626 Gene
chr1:85,276,358-85,448,124
(GRCh38/hg38)
Size:
171,767 bases
Orientation:
Plus strand
chr1:85,742,123-85,913,807
(GRCh37/hg19)

Genomic View for LOC646626 Gene

Genes around LOC646626 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646626 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646626 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646626 Gene

Proteins for LOC646626 Gene

Post-translational modifications for LOC646626 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646626 Gene

Domains & Families for LOC646626 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC646626 Gene

Function for LOC646626 Gene

Phenotypes From GWAS Catalog for LOC646626 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646626 Gene

Localization for LOC646626 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646626 Gene

Pathways & Interactions for LOC646626 Gene

SuperPathways for LOC646626 Gene

No Data Available

Interacting Proteins for LOC646626 Gene

Gene Ontology (GO) - Biological Process for LOC646626 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC646626 Gene

Drugs & Compounds for LOC646626 Gene

No Compound Related Data Available

Transcripts for LOC646626 Gene

mRNA/cDNA for LOC646626 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC646626 Gene

Uncharacterized LOC646626:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646626 Gene

No ASD Table

Relevant External Links for LOC646626 Gene

GeneLoc Exon Structure for
LOC646626

Expression for LOC646626 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC646626 Gene

mRNA differential expression in normal tissues according to GTEx for LOC646626 Gene

This gene is overexpressed in Testis (x9.2).

SOURCE GeneReport for Unigene cluster for LOC646626 Gene:

Hs.653214
genes like me logo Genes that share expression patterns with LOC646626: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646626 Gene

Orthologs for LOC646626 Gene

Evolution for LOC646626 Gene

ENSEMBL:
Gene Tree for LOC646626 (if available)
TreeFam:
Gene Tree for LOC646626 (if available)

No data available for Orthologs for LOC646626 Gene

Paralogs for LOC646626 Gene

No data available for Paralogs for LOC646626 Gene

Variants for LOC646626 Gene

Sequence variations from dbSNP and Humsavar for LOC646626 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs12037217 benign, Immunodeficiency 37 85,276,340(+) C/A upstream_transcript_variant
rs606231305 pathogenic, Immunodeficiency 37 85,276,295(+) C/T upstream_transcript_variant
rs11576939 benign, not specified 85,276,329(+) G/A/C upstream_transcript_variant
rs1000383283 -- 85,275,929(+) G/A upstream_transcript_variant
rs1000664692 -- 85,277,909(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC646626 Gene

Variant ID Type Subtype PubMed ID
esv34165 CNV loss 18971310
nsv830459 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC646626 Gene

Disorders for LOC646626 Gene

Additional Disease Information for LOC646626

No disorders were found for LOC646626 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC646626 Gene

Publications for LOC646626 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC646626 Gene

Sources for LOC646626 Gene

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