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Aliases for LOC646626 Gene

Subcategory (RNA class) for LOC646626 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC646626 Gene

  • Uncharacterized LOC646626 3
  • AL078459.1 5

External Ids for LOC646626 Gene

Previous GeneCards Identifiers for LOC646626 Gene

  • GC01P085514
  • GC01P085743

Summaries for LOC646626 Gene

GeneCards Summary for LOC646626 Gene

LOC646626 (Uncharacterized LOC646626) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC646626 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC646626 Gene

Genomics for LOC646626 Gene

Regulatory Elements for LOC646626 Gene

Enhancers for LOC646626 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H085273 1.8 FANTOM5 ENCODE dbSUPER 10.5 +0.7 686 6.9 FEZF1 DMAP1 YY1 SLC30A9 SP3 NFYC MEF2D ZNF610 ZNF585B GLIS1 ENSG00000232622 BCL10 LOC646626 RPF1 DDAH1
GH01H085296 1.6 Ensembl ENCODE dbSUPER 11.7 +21.9 21937 3.1 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF207 FOS DEK DDAH1 BCL10 LOC646626 CYR61 GC01P085392
GH01H085258 1 ENCODE 10 -16.6 -16590 2.8 PKNOX1 ATF1 MLX ARID4B SIN3A DMAP1 YY1 ETS1 GLIS2 ELK1 LOC646626 C1orf52 BCL10 DDAH1 ENSG00000223254
GH01H085219 1.1 ENCODE dbSUPER 8.7 -55.6 -55632 1.6 HDAC1 LEF1 PKNOX1 TBL1XR1 TAL1 FOSL1 CCNT2 TCF12 GATA2 FOXK2 LOC646626 LOC105378821 SYDE2
GH01H085254 0.7 ENCODE 12.9 -21.4 -21416 0.1 CTCF PKNOX1 ZNF654 TRIM22 REST RAD21 ZNF518A ZNF664 PRDM6 CREB1 BCL10 LOC646626 C1orf52 LOC105378821
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC646626 on UCSC Golden Path with GeneCards custom track

Promoters for LOC646626 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000009195 -158 2401 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1

Genomic Locations for LOC646626 Gene

Genomic Locations for LOC646626 Gene
chr1:85,276,358-85,448,124
(GRCh38/hg38)
Size:
171,767 bases
Orientation:
Plus strand
chr1:85,742,123-85,913,807
(GRCh37/hg19)

Genomic View for LOC646626 Gene

Genes around LOC646626 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646626 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646626 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646626 Gene

Proteins for LOC646626 Gene

Post-translational modifications for LOC646626 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646626 Gene

Domains & Families for LOC646626 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC646626 Gene

Function for LOC646626 Gene

Phenotypes From GWAS Catalog for LOC646626 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646626 Gene

Localization for LOC646626 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC646626 Gene

Pathways & Interactions for LOC646626 Gene

SuperPathways for LOC646626 Gene

No Data Available

Interacting Proteins for LOC646626 Gene

Gene Ontology (GO) - Biological Process for LOC646626 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC646626 Gene

Drugs & Compounds for LOC646626 Gene

No Compound Related Data Available

Transcripts for LOC646626 Gene

mRNA/cDNA for LOC646626 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC646626 Gene

Uncharacterized LOC646626:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646626 Gene

No ASD Table

Relevant External Links for LOC646626 Gene

GeneLoc Exon Structure for
LOC646626

Expression for LOC646626 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC646626 Gene

mRNA differential expression in normal tissues according to GTEx for LOC646626 Gene

This gene is overexpressed in Testis (x9.2).

SOURCE GeneReport for Unigene cluster for LOC646626 Gene:

Hs.653214
genes like me logo Genes that share expression patterns with LOC646626: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646626 Gene

Orthologs for LOC646626 Gene

Evolution for LOC646626 Gene

ENSEMBL:
Gene Tree for LOC646626 (if available)
TreeFam:
Gene Tree for LOC646626 (if available)

No data available for Orthologs for LOC646626 Gene

Paralogs for LOC646626 Gene

No data available for Paralogs for LOC646626 Gene

Variants for LOC646626 Gene

Sequence variations from dbSNP and Humsavar for LOC646626 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs606231305 Pathogenic 85,276,295(-) AGGAC(A/G)TGAGT upstream-variant-2KB, splice-donor-variant
rs1000383283 -- 85,275,929(+) AGTGA(A/G)CAGCC intron-variant, upstream-variant-2KB, reference, synonymous-codon
rs1000664692 -- 85,277,909(+) ACACA(A/G)AAAAA nc-transcript-variant, upstream-variant-2KB
rs1000718516 -- 85,276,707(+) CCGCG(C/G)GCCGA nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000749528 -- 85,276,582(+) CGACG(C/T)GGAGC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for LOC646626 Gene

Variant ID Type Subtype PubMed ID
nsv830459 CNV loss 17160897
esv34165 CNV loss 18971310

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC646626 Gene

Disorders for LOC646626 Gene

Relevant External Links for LOC646626

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC646626

No disorders were found for LOC646626 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC646626 Gene

Publications for LOC646626 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for LOC646626 Gene

Sources for LOC646626 Gene

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