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Aliases for LOC646058 Gene

Aliases for LOC646058 Gene

  • Histone PARylation Factor 1 Pseudogene 3
  • RP11-39H3.1 5

External Ids for LOC646058 Gene

Previous GeneCards Identifiers for LOC646058 Gene

  • GC05M179447
  • GC05M179512

Summaries for LOC646058 Gene

GeneCards Summary for LOC646058 Gene

LOC646058 (Histone PARylation Factor 1 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC646058 Gene

Genomics for LOC646058 Gene

Regulatory Elements for LOC646058 Gene

Enhancers for LOC646058 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G180089 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.8 -3758 2.2 ATF1 SIN3A ZBTB7B YY1 GTF3C2 ZNF766 GLIS2 ZNF143 KLF7 KLF13 MAML1 RNF130 HNRNPH1 LOC646058 RASGEF1C
GH05G180081 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.7 +3.0 2998 4.3 PKNOX1 FOXA2 SIN3A TCF12 GATA2 ZHX2 REST MAFF SMARCA4 MYNN RNF130 MIR340 LTC4S MAML1 LOC646058 ENSG00000278965
GH05G180093 1 ENCODE 0.4 -7.0 -6968 0.8 HNRNPUL1 PKNOX1 ATF1 ARNT TCF12 ZNF766 ELK1 GATA2 KLF13 NCOA1 LOC646058 RASGEF1C
GH05G180134 1 Ensembl ENCODE 0.2 -48.2 -48220 1.1 PKNOX1 ESRRA NFIB SIN3A ZIC2 ZFHX2 CTBP1 EGR1 FOSL2 FOS RNF130 LOC646058 RASGEF1C
GH05G180172 0.8 ENCODE 0.2 -86.6 -86575 3.1 FOXA2 NFIB ZSCAN4 GLI4 RARA ZNF121 GLIS2 ZNF548 ZNF263 HMG20B MAML1 RNF130 RASGEF1C LOC646058
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC646058 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC646058 Gene

Chromosome:
5
Start:
180,085,607 bp from pter
End:
180,087,055 bp from pter
Size:
1,449 bases
Orientation:
Minus strand

Genomic View for LOC646058 Gene

Genes around LOC646058 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC646058 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC646058 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC646058 Gene

Proteins for LOC646058 Gene

Post-translational modifications for LOC646058 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC646058 Gene

Domains & Families for LOC646058 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC646058 Gene

Function for LOC646058 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC646058 Gene

Localization for LOC646058 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC646058 Gene

Pathways & Interactions for LOC646058 Gene

SuperPathways for LOC646058 Gene

No Data Available

Interacting Proteins for LOC646058 Gene

Gene Ontology (GO) - Biological Process for LOC646058 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC646058 Gene

Drugs & Compounds for LOC646058 Gene

No Compound Related Data Available

Transcripts for LOC646058 Gene

mRNA/cDNA for LOC646058 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC646058 Gene

No ASD Table

Relevant External Links for LOC646058 Gene

GeneLoc Exon Structure for
LOC646058

Expression for LOC646058 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC646058 Gene

mRNA differential expression in normal tissues according to GTEx for LOC646058 Gene

This gene is overexpressed in Brain - Cerebellum (x21.2) and Brain - Cerebellar Hemisphere (x21.0).
genes like me logo Genes that share expression patterns with LOC646058: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC646058 Gene

Orthologs for LOC646058 Gene

Evolution for LOC646058 Gene

ENSEMBL:
Gene Tree for LOC646058 (if available)
TreeFam:
Gene Tree for LOC646058 (if available)

No data available for Orthologs for LOC646058 Gene

Paralogs for LOC646058 Gene

No data available for Paralogs for LOC646058 Gene

Variants for LOC646058 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC646058 Gene

Disorders for LOC646058 Gene

No disorders were found for LOC646058 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC646058 Gene

Publications for LOC646058 Gene

No publications were found for LOC646058 Gene.

Products for LOC646058 Gene

Sources for LOC646058 Gene

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