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Aliases for LOC644936 Gene

Aliases for LOC644936 Gene

  • Actin Beta Pseudogene 3
  • CTC-512J14.7 5

External Ids for LOC644936 Gene

Previous GeneCards Identifiers for LOC644936 Gene

  • GC05M079632
  • GC05M079594

Summaries for LOC644936 Gene

GeneCards Summary for LOC644936 Gene

LOC644936 (Actin Beta Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC644936 Gene

Genomics for LOC644936 Gene

Regulatory Elements for LOC644936 Gene

Enhancers for LOC644936 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F079611 1.2 ENCODE 16.2 +689.9 689936 3.5 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF766 PAPD4 JMY KRT18P45 LOC644936 RPL39P20 SPZ1 RPS3AP20 RBMX2P5 GC05M079620
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC644936 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC644936 Gene

Chromosome:
5
Start:
80,299,085 bp from pter
End:
80,302,847 bp from pter
Size:
3,763 bases
Orientation:
Minus strand

Genomic View for LOC644936 Gene

Genes around LOC644936 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC644936 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC644936 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC644936 Gene

Proteins for LOC644936 Gene

Post-translational modifications for LOC644936 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC644936 Gene

Domains & Families for LOC644936 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC644936 Gene

Function for LOC644936 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC644936 Gene

Localization for LOC644936 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC644936 Gene

Pathways & Interactions for LOC644936 Gene

SuperPathways for LOC644936 Gene

No Data Available

Interacting Proteins for LOC644936 Gene

Gene Ontology (GO) - Biological Process for LOC644936 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC644936 Gene

Transcripts for LOC644936 Gene

mRNA/cDNA for LOC644936 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC644936 Gene

Actin, beta pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC644936 Gene

No ASD Table

Relevant External Links for LOC644936 Gene

GeneLoc Exon Structure for
LOC644936

Expression for LOC644936 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC644936 Gene

mRNA differential expression in normal tissues according to GTEx for LOC644936 Gene

This gene is overexpressed in Testis (x53.0).

Protein differential expression in normal tissues from HIPED for LOC644936 Gene

This gene is overexpressed in Skin (25.7), Brain (24.6), and Urine (18.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LOC644936 Gene



Protein tissue co-expression partners for LOC644936 Gene

SOURCE GeneReport for Unigene cluster for LOC644936 Gene:

Hs.627173
genes like me logo Genes that share expression patterns with LOC644936: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for LOC644936 Gene

Orthologs for LOC644936 Gene

Evolution for LOC644936 Gene

ENSEMBL:
Gene Tree for LOC644936 (if available)
TreeFam:
Gene Tree for LOC644936 (if available)

No data available for Orthologs for LOC644936 Gene

Paralogs for LOC644936 Gene

No data available for Paralogs for LOC644936 Gene

Variants for LOC644936 Gene

Sequence variations from dbSNP and Humsavar for LOC644936 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10036610 -- 80,301,384(+) cgccc(C/T)gtcag upstream-variant-2KB
rs10038569 -- 80,301,522(+) ggggg(C/G/T)gtcag upstream-variant-2KB
rs10046042 -- 80,299,266(+) AAAAG(C/T)ATTAA nc-transcript-variant
rs10053093 -- 80,301,773(+) tgccc(A/G)gctgc upstream-variant-2KB
rs10155144 -- 80,301,681(-) ggccg(C/G)gcggg upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LOC644936 Gene

Variant ID Type Subtype PubMed ID
nsv980690 CNV duplication 23825009
nsv518480 CNV gain 19592680
esv3605567 CNV gain 21293372
esv3605566 CNV loss 21293372
dgv1108e214 CNV gain 21293372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC644936 Gene

Disorders for LOC644936 Gene

Relevant External Links for LOC644936

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC644936

No disorders were found for LOC644936 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC644936 Gene

Publications for LOC644936 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC644936 Gene

Sources for LOC644936 Gene

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