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Aliases for LOC644656 Gene

Subcategory (RNA class) for LOC644656 Gene

lncRNA

Quality Score for this RNA gene is

2

Aliases for LOC644656 Gene

  • Uncharacterized LOC644656 3
  • CTD-2371O3.3 3 5

External Ids for LOC644656 Gene

ORGUL Members for LOC644656 Gene

Previous GeneCards Identifiers for LOC644656 Gene

  • GC11U900710

Summaries for LOC644656 Gene

GeneCards Summary for LOC644656 Gene

LOC644656 (Uncharacterized LOC644656) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC644656 Gene

Genomics for LOC644656 Gene

Regulatory Elements for LOC644656 Gene

Enhancers for LOC644656 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F009458 1.2 ENCODE 0.8 -0.7 -697 5.0 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 SNORA3B TMEM9B-AS1 WEE1 RPL27A RPL21P97 ENSG00000254397 IPO7 LOC644656 PIR40365
GH11F009488 1.2 Ensembl ENCODE 0.3 -29.0 -28978 1.6 HDGF PKNOX1 ATF1 MLX ARID4B CBX5 SP5 NFYC JUNB MXD4 ZNF143 WEE1 ENSG00000238387 STK33 LOC644656 PIR40365
GH11F009528 1.3 Ensembl ENCODE 0.2 -69.4 -69401 2.9 HDGF PKNOX1 ARNT CREB3L1 SIN3A ARID4B DMAP1 ZNF766 CBX5 ZNF263 ZNF143 WEE1 ENSG00000238387 IPO7 PIR40365 LOC644656
GH11F009506 1.1 Ensembl ENCODE 0.2 -46.3 -46293 1.3 PKNOX1 ARID4B ZNF2 RAD21 RFX5 GLIS2 ZNF143 ZNF263 ZNF362 ZNF654 WEE1 ENSG00000238387 LOC644656 PIR40365
GH11F009534 1.1 Ensembl ENCODE 0.2 -74.3 -74299 1.6 ELF3 CBX3 TBL1XR1 ARID4B SIN3A RAD21 ZNF143 CEBPB REST RAD51 WEE1 ENSG00000238387 ZNF143 PIR40365 LOC644656
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC644656 on UCSC Golden Path with GeneCards custom track

Promoters for LOC644656 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001601686 -98 3201 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1

Genomic Location for LOC644656 Gene

Chromosome:
11
Start:
9,459,556 bp from pter
End:
9,460,702 bp from pter
Size:
1,147 bases
Orientation:
Minus strand

Genomic View for LOC644656 Gene

Genes around LOC644656 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC644656 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC644656 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC644656 Gene

Proteins for LOC644656 Gene

  • Protein details for LOC644656 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q9BT31
    Recommended name:
    LOC644656 protein
    Protein Accession:
    Q9BT31

    Protein attributes for LOC644656 Gene

    Size:
    87 amino acids
    Molecular mass:
    9271 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC644656 Gene

Post-translational modifications for LOC644656 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC644656 Gene

Domains & Families for LOC644656 Gene

Protein Domains for LOC644656 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LOC644656 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC644656: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC644656 Gene

Function for LOC644656 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC644656 Gene

Localization for LOC644656 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC644656 Gene

Pathways & Interactions for LOC644656 Gene

SuperPathways for LOC644656 Gene

No Data Available

Interacting Proteins for LOC644656 Gene

Gene Ontology (GO) - Biological Process for LOC644656 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC644656 Gene

Transcripts for LOC644656 Gene

mRNA/cDNA for LOC644656 Gene

(3) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC644656 Gene

Uncharacterized LOC644656:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC644656 Gene

No ASD Table

Relevant External Links for LOC644656 Gene

GeneLoc Exon Structure for
LOC644656

Expression for LOC644656 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC644656 Gene

mRNA expression in normal human tissues for LOC644656 Gene

SOURCE GeneReport for Unigene cluster for LOC644656 Gene:

Hs.597846
genes like me logo Genes that share expression patterns with LOC644656: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LOC644656 Gene

Orthologs for LOC644656 Gene

Evolution for LOC644656 Gene

ENSEMBL:
Gene Tree for LOC644656 (if available)
TreeFam:
Gene Tree for LOC644656 (if available)

No data available for Orthologs for LOC644656 Gene

Paralogs for LOC644656 Gene

No data available for Paralogs for LOC644656 Gene

Variants for LOC644656 Gene

Sequence variations from dbSNP and Humsavar for LOC644656 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1048487 -- 9,460,489(-) TCGAA(A/G)GGAGA nc-transcript-variant, upstream-variant-2KB
rs10840243 -- 9,461,946(+) GTGAG(A/G)ATGTG intron-variant, upstream-variant-2KB
rs11042365 -- 9,460,054(+) GCAAC(C/G)GCCAC nc-transcript-variant, upstream-variant-2KB
rs11042366 -- 9,461,324(+) CCCCA(A/G)CTTGT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs11042367 -- 9,461,770(+) TATTG(G/T)GGAAC intron-variant, upstream-variant-2KB, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for LOC644656 Gene

Variant ID Type Subtype PubMed ID
esv3625333 CNV loss 21293372
nsv1039537 CNV gain 25217958
nsv1055078 CNV gain 25217958
nsv499766 OTHER inversion 21111241
nsv7215 OTHER inversion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC644656 Gene

Disorders for LOC644656 Gene

Relevant External Links for LOC644656

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC644656

No disorders were found for LOC644656 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC644656 Gene

Publications for LOC644656 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC644656 Gene

Sources for LOC644656 Gene

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