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Aliases for LOC642846 Gene

Subcategory (RNA class) for LOC642846 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC642846 Gene

  • DEAD/H (Asp-Glu-Ala-Asp/His) Box Polypeptide 11-Like 3
  • AC009533.1 5

External Ids for LOC642846 Gene

Previous GeneCards Identifiers for LOC642846 Gene

  • GC12P009437

Summaries for LOC642846 Gene

GeneCards Summary for LOC642846 Gene

LOC642846 (DEAD/H (Asp-Glu-Ala-Asp/His) Box Polypeptide 11-Like) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC642846 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC642846 Gene

Genomics for LOC642846 Gene

GeneHancer (GH) Regulatory Elements for LOC642846 Gene

Promoters and enhancers for LOC642846 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I009283 Enhancer 1.1 Ensembl ENCODE 86.4 +7.5 7488 3.4 HDGF PKNOX1 ATF1 ZFP64 ARID4B SIN3A ZNF2 POLR2B GLIS2 ZNF207 LOC642846 A2MP1 DDX12P LINC02367 GC12M009286 GC12P009275
GH12I008947 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 22 -325.0 -325022 8.7 CLOCK SMAD1 ARID4B SIN3A FEZF1 DMAP1 YBX1 ZNF2 YY1 POLR2B M6PR KLRG1 LOC642846 LINC00612 PHC1 DDX12P ENSG00000213443 FOXJ2 ENSG00000257105
GH12I009447 Promoter/Enhancer 1.5 Ensembl ENCODE 22 +171.3 171284 2.8 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A ZNF2 TCF12 POLR2B GLIS2 DDX12P ENSG00000284634 LOC105376678 LOC728715 LOC642846 ENSG00000214776 M6PR CLEC2D ENSG00000213443 LINC00612
GH12I009646 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 13.7 +374.5 374498 10 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 IRF4 SLC30A9 ZNF207 ZNF143 LOC105369728 CLEC2D LOC374443 DDX12P KLRB1 CLECL1 CLEC7A M6PR CLEC12A LOC642846
GH12I009701 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 14.9 +425.3 425313 2.2 ZFP64 ZC3H11A EBF1 ZNF781 ZNF518A ZNF697 ZNF555 ZFHX2 RUNX3 EGR2 LINC02390 CLECL1 PHC1 CLEC2D KLRA1P LOC642846 KLRB1 DDX12P LINC00612 ENSG00000213443
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC642846 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC642846 gene promoter:

Genomic Locations for LOC642846 Gene

Genomic Locations for LOC642846 Gene
chr12:9,277,235-9,314,088
(GRCh38/hg38)
Size:
36,854 bases
Orientation:
Plus strand
chr12:9,429,831-9,466,684
(GRCh37/hg19)

Genomic View for LOC642846 Gene

Genes around LOC642846 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC642846 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642846 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC642846 Gene

Proteins for LOC642846 Gene

Post-translational modifications for LOC642846 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642846 Gene

Domains & Families for LOC642846 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC642846 Gene

Function for LOC642846 Gene

Phenotypes From GWAS Catalog for LOC642846 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642846 Gene

Localization for LOC642846 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642846 Gene

Pathways & Interactions for LOC642846 Gene

SuperPathways for LOC642846 Gene

No Data Available

Interacting Proteins for LOC642846 Gene

Gene Ontology (GO) - Biological Process for LOC642846 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC642846 Gene

Drugs & Compounds for LOC642846 Gene

No Compound Related Data Available

Transcripts for LOC642846 Gene

mRNA/cDNA for LOC642846 Gene

(10) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC642846 Gene

DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642846 Gene

No ASD Table

Relevant External Links for LOC642846 Gene

GeneLoc Exon Structure for
LOC642846

Expression for LOC642846 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC642846 Gene

SOURCE GeneReport for Unigene cluster for LOC642846 Gene:

Hs.447869
genes like me logo Genes that share expression patterns with LOC642846: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642846 Gene

Orthologs for LOC642846 Gene

Evolution for LOC642846 Gene

ENSEMBL:
Gene Tree for LOC642846 (if available)
TreeFam:
Gene Tree for LOC642846 (if available)

No data available for Orthologs for LOC642846 Gene

Paralogs for LOC642846 Gene

No data available for Paralogs for LOC642846 Gene

Variants for LOC642846 Gene

Sequence variations from dbSNP and Humsavar for LOC642846 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000131893 -- 9,313,417(+) A/G non_coding_transcript_variant
rs1000238764 -- 9,290,024(+) T/C intron_variant
rs1000502253 -- 9,313,042(+) T/C intron_variant
rs1000843879 -- 9,297,198(+) G/C intron_variant
rs1000950958 -- 9,308,048(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC642846 Gene

Variant ID Type Subtype PubMed ID
dgv761n106 OTHER inversion 24896259
esv2759878 CNV gain+loss 17122850
esv3580605 CNV gain 25503493
esv3628495 CNV loss 21293372
esv3628496 CNV gain 21293372
nsv1050161 CNV loss 25217958
nsv1051530 CNV gain 25217958
nsv1118226 CNV deletion 24896259
nsv1118501 CNV duplication 24896259
nsv1141208 CNV duplication 24896259
nsv1150838 CNV duplication 26484159
nsv523958 CNV loss 19592680
nsv557355 CNV gain 21841781
nsv7228 OTHER inversion 18451855
nsv975441 CNV duplication 23825009
nsv983274 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC642846 Gene

Disorders for LOC642846 Gene

Additional Disease Information for LOC642846

No disorders were found for LOC642846 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC642846 Gene

Publications for LOC642846 Gene

  1. Genetic variants associated with breast size also influence breast cancer risk. (PMID: 22747683) Eriksson N … Tung JY (BMC medical genetics 2012) 3 58
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC642846 Gene

Sources for LOC642846 Gene

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