Aliases for LOC642846 Gene
Subcategory (RNA class) for LOC642846 Gene
ncRNA
Quality Score for this RNA gene is
2
External Ids for LOC642846 Gene
- Entrez Gene: 642846
- Ensembl: ENSG00000111788
Previous GeneCards Identifiers for LOC642846 Gene
- GC12P009437
Summaries for LOC642846 Gene
GeneCards Summary for LOC642846 Gene
LOC642846 (DEAD/H (Asp-Glu-Ala-Asp/His) Box Polypeptide 11-Like) is an RNA Gene, and is affiliated with the ncRNA class.
Additional gene information for LOC642846 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC642846 Gene
Genomics for LOC642846 Gene
GeneHancer (GH) Regulatory Elements for LOC642846 Gene
Promoters and enhancers for LOC642846 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data dump
GeneHancers around LOC642846 on UCSC Golden Path with GeneCards custom track
- Top Transcription factor binding sites by QIAGEN in the LOC642846 gene promoter:
Regulatory Element Products
Genomic Locations for LOC642846 Gene
Genomic Locations for LOC642846 Gene
- chr12:9,277,235-9,314,088
- (GRCh38/hg38)
- Size:
- 36,854 bases
- Orientation:
- Plus strand
- chr12:9,429,831-9,466,684
- (GRCh37/hg19)
Genomic View for LOC642846 Gene
Genes around LOC642846 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 12p13.31 by Ensembl
- 12p13.31 by Entrez Gene
LOC642846 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)


RefSeq DNA sequence for LOC642846 Gene
Proteins for LOC642846 Gene
Post-translational modifications for LOC642846 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for LOC642846
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LOC642846
- Origene Custom Protein Services for LOC642846
- Search GeneTex for Proteins for LOC642846
No data available for DME Specific Peptides for LOC642846 Gene
Domains & Families for LOC642846 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC642846 Gene
Function for LOC642846 Gene
Phenotypes From GWAS Catalog for LOC642846 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC642846
-
- Search ViGene Biosciences for LOC642846
CRISPR Products
- Browse CRISPR knockouts for LOC642846
miRNA Products
- Search ViGene Biosciences for LOC642846
Inhibitory RNA Products
- Search ViGene Biosciences for LOC642846
Clone Products
- GenScript: Custom all cDNA clones Services for LOC642846
- VectorBuilder custom plasmid, inducible vectors for LOC642846
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC642846
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642846 Gene
Localization for LOC642846 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC642846 Gene
Transcripts for LOC642846 Gene
mRNA/cDNA for LOC642846 Gene
- (10) Additional mRNA sequences :
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for LOC642846 Gene
CRISPR Products
- Browse CRISPR knockouts for LOC642846
miRNA Products
- Search ViGene Biosciences for LOC642846
Inhibitory RNA Products
- Search ViGene Biosciences for LOC642846
Clone Products
- GenScript: Custom all cDNA clones Services for LOC642846
- VectorBuilder custom plasmid, inducible vectors for LOC642846
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC642846
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Relevant External Links for LOC642846 Gene
- GeneLoc Exon Structure for
- LOC642846
Expression for LOC642846 Gene
SOURCE GeneReport for Unigene cluster for LOC642846 Gene:
Hs.447869Primer Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642846 Gene
Orthologs for LOC642846 Gene
No data available for Orthologs for LOC642846 Gene
Paralogs for LOC642846 Gene
No data available for Paralogs for LOC642846 Gene
Variants for LOC642846 Gene
SNP ID | Clin | Chr 12 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs1000131893 | -- | 9,313,417(+) | A/G | non_coding_transcript_variant | |
rs1000238764 | -- | 9,290,024(+) | T/C | intron_variant | |
rs1000502253 | -- | 9,313,042(+) | T/C | intron_variant | |
rs1000843879 | -- | 9,297,198(+) | G/C | intron_variant | |
rs1000950958 | -- | 9,308,048(+) | G/A | intron_variant |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv761n106 | OTHER | inversion | 24896259 |
esv2759878 | CNV | gain+loss | 17122850 |
esv3580605 | CNV | gain | 25503493 |
esv3628495 | CNV | loss | 21293372 |
esv3628496 | CNV | gain | 21293372 |
nsv1050161 | CNV | loss | 25217958 |
nsv1051530 | CNV | gain | 25217958 |
nsv1118226 | CNV | deletion | 24896259 |
nsv1118501 | CNV | duplication | 24896259 |
nsv1141208 | CNV | duplication | 24896259 |
nsv1150838 | CNV | duplication | 26484159 |
nsv523958 | CNV | loss | 19592680 |
nsv557355 | CNV | gain | 21841781 |
nsv7228 | OTHER | inversion | 18451855 |
nsv975441 | CNV | duplication | 23825009 |
nsv983274 | CNV | duplication | 23825009 |
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC642846 Gene
Disorders for LOC642846 Gene
Additional Disease Information for LOC642846
No disorders were found for LOC642846 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC642846 Gene
Publications for LOC642846 Gene
- Genetic variants associated with breast size also influence breast cancer risk. (PMID: 22747683) Eriksson N … Tung JY (BMC medical genetics 2012) 3 58
- Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 58
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
Products for LOC642846 Gene
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- Cloud-Clone Corp. disease models service
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- Browse primers at Cloud-Clone Corp.
- Cloud-Clone Corp. primary cells service
- Cyagen custom Knockout/knockin (KOKI) mouse models for LOC642846
- VectorBuilder custom plasmid, inducible vectors for LOC642846
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for LOC642846
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
- Search GeneTex for Antibodies for LOC642846
- Search GeneTex for Proteins for LOC642846
Sources for LOC642846 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
- (116) Orphanet
- (117) UMLS
- (118) GTR
- (119) Disease Ontology
- (120) Genetics Home Reference
- (121) MeSH
- (122) MedlinePlus
- (123) CDC
- (124) NINDS
- (125) NCBI Bookshelf
- (126) ClinVar
- (127) Gene Damage Index
- (128) ViGene Biosciences
- (129) HPO
- (130) UDN
- (131) VISTA
- (132) FANTOM5
- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew