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LOC642846 Gene(RNA Gene)

DEAD/H (Asp-Glu-Ala-Asp/His) Box Polypeptide 11-Like

GCID:
GC12P009329
GIFtS:
17
Genes Participants
UDN Logo

Aliases for LOC642846 Gene

Subcategory (RNA class) for LOC642846 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC642846 Gene

  • DEAD/H (Asp-Glu-Ala-Asp/His) Box Polypeptide 11-Like 3
  • RP11-22B23.1 5

External Ids for LOC642846 Gene

Previous GeneCards Identifiers for LOC642846 Gene

  • GC12P009437

Summaries for LOC642846 Gene

GeneCards Summary for LOC642846 Gene

LOC642846 (DEAD/H (Asp-Glu-Ala-Asp/His) Box Polypeptide 11-Like) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC642846 Gene

Genomics for LOC642846 Gene

Products:

  1. Regulatory Element

Regulatory Elements for LOC642846 Gene

Enhancers for LOC642846 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G009283 1.2 Ensembl ENCODE 86.4 +7.5 7488 3.4 HDGF PKNOX1 ATF1 CREB3L1 ZFP64 ARID4B SIN3A ZNF2 GLIS2 ZNF143 LOC642846 A2MP1 DDX12P LINC02367 GC12M009286
GH12G010211 1.4 ENCODE dbSUPER 29.3 +936.6 936599 5.3 MLX CREB3L1 DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 DDX12P LOC642846 LOC255308 TAS2R43 KLRA1P ENSG00000213443 ENSG00000257027 ENSG00000256682 LOC374443 ENSG00000255753
GH12G008617 1.4 FANTOM5 Ensembl ENCODE 15.9 -658.3 -658342 2.7 PKNOX1 BMI1 ZBTB40 GTF3C2 GATA2 FOS RELB IKZF2 CEBPB JUNB CLEC4E LOC642846 DDX12P M6PR LINC00612 ENSG00000255753 A2ML1-AS2 A2ML1 CLEC6A CLEC4A
GH12G009605 1.2 FANTOM5 ENCODE 13.5 +329.7 329665 3.2 HDAC1 PTBP1 PKNOX1 TBL1XR1 BMI1 EGR1 ZNF143 ETV6 RELB U2AF2 CLEC2D ENSG00000214776 LOC642846 KLRF2 DDX12P LOC374443 LINC02367 KLRB1 KLRF1 PIR60914
GH12G009244 0.7 ENCODE 21.6 -32.9 -32856 0.2 SOX13 ZNF384 THRB NCOR1 NR2F6 ZNF652 CREM MIXL1 THAP11 GATAD2A LOC642846 PZP LOC728715 PTMAP4 ENSG00000256427
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC642846 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the LOC642846 gene promoter:

Genomic Location for LOC642846 Gene

Chromosome:
12
Start:
9,277,235 bp from pter
End:
9,314,088 bp from pter
Size:
36,854 bases
Orientation:
Plus strand

Genomic View for LOC642846 Gene

Genes around LOC642846 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC642846 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC642846 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LOC642846 Gene

Proteins for LOC642846 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LOC642846 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC642846 Gene

Domains & Families for LOC642846 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC642846 Gene

Function for LOC642846 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC642846 Gene

Localization for LOC642846 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC642846 Gene

Pathways & Interactions for LOC642846 Gene

SuperPathways for LOC642846 Gene

PathCards logo More details on SuperPathways for LOC642846
No Data Available

Interacting Proteins for LOC642846 Gene

Gene Ontology (GO) - Biological Process for LOC642846 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC642846 Gene

Drugs & Compounds for LOC642846 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LOC642846 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LOC642846 Gene

(10) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC642846 Gene

DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC642846 Gene

No ASD Table

Relevant External Links for LOC642846 Gene

GeneLoc Exon Structure for
LOC642846

Expression for LOC642846 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC642846 Gene

mRNA expression in normal human tissues for LOC642846 Gene
mRNA expression by BioGPS for LOC642846 GenemRNA expression by GTEx for LOC642846 Gene

SOURCE GeneReport for Unigene cluster for LOC642846 Gene:

Hs.447869
genes like me logo Genes that share expression patterns with LOC642846: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC642846 Gene

Orthologs for LOC642846 Gene

Evolution for LOC642846 Gene

ENSEMBL:
Gene Tree for LOC642846 (if available)
TreeFam:
Gene Tree for LOC642846 (if available)

No data available for Orthologs for LOC642846 Gene

Paralogs for LOC642846 Gene

No data available for Paralogs for LOC642846 Gene

Variants for LOC642846 Gene

Sequence variations from dbSNP and Humsavar for LOC642846 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000131893 -- 9,313,417(+) CTGAG(A/G)GCCAG nc-transcript-variant
rs1000238764 -- 9,290,024(+) TAGAG(C/T)CTTCG intron-variant
rs1000502253 -- 9,313,042(+) CTACC(C/T)TTTTC intron-variant
rs1000843879 -- 9,297,198(+) GACCT(C/G)GGTCC intron-variant
rs1000950958 -- 9,308,048(+) TTTTT(A/G)TATGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC642846 Gene

Variant ID Type Subtype PubMed ID
dgv761n106 OTHER inversion 24896259
esv2759878 CNV gain+loss 17122850
esv3580605 CNV gain 25503493
esv3628495 CNV loss 21293372
esv3628496 CNV gain 21293372
nsv1050161 CNV loss 25217958
nsv1051530 CNV gain 25217958
nsv1118226 CNV deletion 24896259
nsv1118501 CNV duplication 24896259
nsv1141208 CNV duplication 24896259
nsv1150838 CNV duplication 26484159
nsv523958 CNV loss 19592680
nsv557355 CNV gain 21841781
nsv7228 OTHER inversion 18451855
nsv975441 CNV duplication 23825009
nsv983274 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC642846 Gene

Disorders for LOC642846 Gene

Relevant External Links for LOC642846

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC642846

No disorders were found for LOC642846 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC642846 Gene

Publications for LOC642846 Gene

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64
  2. Genetic variants associated with breast size also influence breast cancer risk. (PMID: 22747683) Eriksson N. … Tung J.Y. (BMC Med. Genet. 2012) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC642846 Gene

Sources for LOC642846 Gene

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