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Aliases for LOC554223 Gene

Aliases for LOC554223 Gene

  • Histocompatibility Antigen-Related 3

External Ids for LOC554223 Gene

Previous GeneCards Identifiers for LOC554223 Gene

  • GC06U900788
  • GC06P030027
  • GC06P030194
  • GC06P030039
  • GC06P030095
  • GC06P030369
  • GC06P030519
  • GC06P030753

Summaries for LOC554223 Gene

GeneCards Summary for LOC554223 Gene

LOC554223 (Histocompatibility Antigen-Related) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC554223 Gene

Genomics for LOC554223 Gene

Regulatory Elements for LOC554223 Gene

Enhancers for LOC554223 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G030100 1.7 FANTOM5 Ensembl ENCODE 2.4 +310.2 310175 3.9 FOXA2 MLX ARNT AGO1 WRNIP1 ARID4B SIN3A DMAP1 SLC30A9 ZNF143 HLA-K RPL23AP1 TRIM31-AS1 HCG4 MICD ZNRD1ASP ETF1P1 PPP1R10 HCG18 PAIP1P1
GH06G029789 1.1 ENCODE dbSUPER 0.7 -0.3 -338 3.9 CBX3 PKNOX1 ZFP64 RAD21 YY1 TCF12 CBX5 SCRT2 ZNF207 FOS HCG4 HLA-H ZNRD1 HLA-A HLA-T ZNRD1ASP HCG4P3 ZFP57 TRIM31-AS1 TRIM31
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC554223 on UCSC Golden Path with GeneCards custom track

Promoters for LOC554223 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195335 594 1001 CTCF CBX3 PKNOX1 TAL1 MAX RAD21 YY1 TCF12 POLR2A CBX5

Genomic Location for LOC554223 Gene

Chromosome:
6
Start:
29,791,906 bp from pter
End:
29,797,807 bp from pter
Size:
5,902 bases
Orientation:
Plus strand

Genomic View for LOC554223 Gene

Genes around LOC554223 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC554223 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC554223 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for LOC554223 Gene

  • Protein details for LOC554223 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q86V94
    Recommended name:
    LOC554223 protein
    Protein Accession:
    Q86V94

    Protein attributes for LOC554223 Gene

    Size:
    189 amino acids
    Molecular mass:
    20903 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC554223 Gene

Post-translational modifications for LOC554223 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC554223 Gene

Domains & Families for LOC554223 Gene

Protein Domains for LOC554223 Gene

Suggested Antigen Peptide Sequences for LOC554223 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC554223: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC554223 Gene

Function for LOC554223 Gene

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC554223 Gene

Localization for LOC554223 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC554223 Gene

Pathways & Interactions for LOC554223 Gene

SuperPathways for LOC554223 Gene

No Data Available

Interacting Proteins for LOC554223 Gene

Gene Ontology (GO) - Biological Process for LOC554223 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC554223 Gene

Transcripts for LOC554223 Gene

mRNA/cDNA for LOC554223 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :

Unigene Clusters for LOC554223 Gene

Histocompatibility antigen-related:
Representative Sequences:

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LOC554223 Gene

No ASD Table

Relevant External Links for LOC554223 Gene

GeneLoc Exon Structure for
LOC554223

Expression for LOC554223 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC554223 Gene

mRNA expression in normal human tissues for LOC554223 Gene

SOURCE GeneReport for Unigene cluster for LOC554223 Gene:

Hs.60856
genes like me logo Genes that share expression patterns with LOC554223: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC554223 Gene

Orthologs for LOC554223 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for LOC554223 Gene

Organism Taxonomy Gene Similarity Type Details
rat
(Rattus norvegicus)
Mammalia LOC102546968 34
  • 80.14 (n)
Species where no ortholog for LOC554223 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

No data available for Evolution for LOC554223 Gene

Paralogs for LOC554223 Gene

genes like me logo Genes that share paralogs with LOC554223: view

No data available for Paralogs for LOC554223 Gene

Variants for LOC554223 Gene

Sequence variations from dbSNP and Humsavar for LOC554223 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000248803 -- 29,795,026(+) CCATA(C/T)ATCAT intron-variant, upstream-variant-2KB
rs1000893717 -- 29,792,844(+) GGCCC(A/G)GGAGC intron-variant, nc-transcript-variant
rs1002403418 -- 29,791,081(+) CAGAG(A/C/T)CTTGC nc-transcript-variant, upstream-variant-2KB
rs1003046185 -- 29,793,412(+) GCTTG(A/G)ATGAA intron-variant, upstream-variant-2KB
rs1003310663 -- 29,790,723(+) TACAA(C/T)GAACC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LOC554223 Gene

Variant ID Type Subtype PubMed ID
dgv1086e199 CNV deletion 23128226
dgv3467e59 CNV duplication 20981092
dgv992e201 CNV deletion 23290073
esv2591572 CNV deletion 19546169
esv25966 CNV gain+loss 19812545
esv2731768 CNV deletion 23290073
esv2731772 CNV deletion 23290073
esv2731774 CNV deletion 23290073
esv3332677 CNV duplication 20981092
esv3420260 CNV duplication 20981092
esv3567488 CNV deletion 23714750
nsv1074389 CNV deletion 25765185
nsv10809 CNV gain 18304495
nsv1122126 CNV deletion 24896259
nsv1144137 CNV deletion 24896259
nsv350049 CNV deletion 16902084
nsv428139 CNV gain 18775914
nsv508397 CNV deletion 20534489
nsv955957 CNV deletion 24416366
nsv965702 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC554223 Gene

Disorders for LOC554223 Gene

Relevant External Links for LOC554223

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC554223

No disorders were found for LOC554223 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC554223 Gene

Publications for LOC554223 Gene

  1. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  2. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3 64
  3. Evidence that humoral allograft rejection in lung transplant patients is not histocompatibility antigen-related. (PMID: 14510700) Magro C.M. … Ross P. (Am. J. Transplant. 2003) 22 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC554223 Gene

Sources for LOC554223 Gene

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