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Aliases for LOC554223 Gene

Aliases for LOC554223 Gene

  • Histocompatibility Antigen-Related 3

External Ids for LOC554223 Gene

Summaries for LOC554223 Gene

GeneCards Summary for LOC554223 Gene

LOC554223 (Histocompatibility Antigen-Related) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC554223 Gene

Genomics for LOC554223 Gene

Genomic Location for LOC554223 Gene

Start:
29,791,906 bp from pter
End:
29,797,807 bp from pter
Size:
5,902 bases
Orientation:
Plus strand

Genomic View for LOC554223 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LOC554223 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for Regulatory Elements for LOC554223 Gene

Proteins for LOC554223 Gene

  • Protein details for LOC554223 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q86V94-Q86V94
    Recommended name:
    LOC554223 protein
    Protein Accession:
    Q86V94
    Secondary Accessions:

    Protein attributes for LOC554223 Gene

    Size:
    189 amino acids
    Molecular mass:
    20903 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC554223 Gene

Proteomics data for LOC554223 Gene at MOPED

Post-translational modifications for LOC554223 Gene

No Post-translational modifications

Other Protein References for LOC554223 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for LOC554223 Gene

Domains for LOC554223 Gene

Protein Domains for LOC554223 Gene

genes like me logo Genes that share domains with LOC554223: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC554223 Gene

Function for LOC554223 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LOC554223 Gene

Localization for LOC554223 Gene

No data available for Gene Ontology (GO) - Cellular Components for LOC554223 Gene

Pathways for LOC554223 Gene

SuperPathways for LOC554223 Gene

No Data Available

Interacting Proteins for LOC554223 Gene

Gene Ontology (GO) - Biological Process for LOC554223 Gene

None

No data available for Pathways by source for LOC554223 Gene

Transcripts for LOC554223 Gene

mRNA/cDNA for LOC554223 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :

Unigene Clusters for LOC554223 Gene

Histocompatibility antigen-related:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC554223 Gene

No ASD Table

Relevant External Links for LOC554223 Gene

GeneLoc Exon Structure for
LOC554223

Expression for LOC554223 Gene

mRNA expression in normal human tissues for LOC554223 Gene

mRNA expression in normal human tissues for LOC554223 Gene

SOURCE GeneReport for Unigene cluster for LOC554223 Gene Hs.60856

genes like me logo Genes that share expressions with LOC554223: view

Orthologs for LOC554223 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for LOC554223 Gene

Organism Taxonomy Gene Similarity Type Details
rat
(Rattus norvegicus)
Mammalia LOC102546968 36
  • 80.14 (n)
  • 71.28 (a)
Species with no ortholog for LOC554223:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

No data available for Evolution for LOC554223 Gene

Paralogs for LOC554223 Gene

genes like me logo Genes that share paralogs with LOC554223: view

No data available for Paralogs for LOC554223 Gene

Variants for LOC554223 Gene

Sequence variations from dbSNP and Humsavar for LOC554223 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs1134664 -- 29,797,548(+) GCAAC(A/G/T)TTGTG utr-variant-3-prime
rs1611196 -- 29,790,218(+) ttctt(C/T)ctgag upstream-variant-2KB
rs1629068 -- 29,797,514(-) aatca(C/T)ctgag utr-variant-3-prime
rs1630969 -- 29,797,224(-) caggc(C/T)acacg utr-variant-3-prime
rs1633000 -- 29,798,088(-) accca(A/G)tcctt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC554223 Gene

Variant ID Type Subtype PubMed ID
esv25966 CNV Gain+Loss 19812545
nsv428139 CNV Gain 18775914
nsv508397 CNV Loss 20534489
dgv1039e201 CNV Deletion 23290073
nsv10809 CNV Gain 18304495
nsv883532 CNV Loss 21882294
esv2731768 CNV Deletion 23290073
esv2731772 CNV Deletion 23290073
dgv1086e199 CNV Deletion 23128226
dgv6446n71 CNV Loss 21882294
nsv883537 CNV Loss 21882294
nsv883539 CNV Loss 21882294
esv2591572 CNV Deletion 19546169
esv2731774 CNV Deletion 23290073
nsv350049 CNV Loss 16902084

Relevant External Links for LOC554223 Gene

HapMap Linkage Disequilibrium report
LOC554223

Disorders for LOC554223 Gene

No disorders were found for LOC554223 Gene.

No data available for UniProtKB/Swiss-Prot for LOC554223 Gene

Publications for LOC554223 Gene

  1. Evidence that humoral allograft rejection in lung transplant patients is not histocompatibility antigen-related. (PMID: 14510700) Magro C.M. … Ross P. (Am. J. Transplant. 2003) 23
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3

Products for LOC554223 Gene

Sources for LOC554223 Gene

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