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LOC554223 Gene

protein-coding   GIFtS: 23
GCID: GC06P030194

Histocompatibility Antigen-Related


  Search for LOC554223
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Histocompatibility Antigen-Related2

External Ids:    Entrez Gene: 5542232   UniProtKB: Q86V944   

Export aliases for LOC554223 gene to outside databases

Previous GC identifers: GC06U900788 GC06P030027


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for LOC554223 Gene:
LOC554223 is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000006.12  NC_018917.2  NT_007592.16  NT_113891.3  NT_167244.2  NT_167245.2  NT_167246.2  NT_167247.2  
NT_167248.2  NT_167249.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for LOC554223
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for LOC554223

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat LOC554223


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21.3   

LOC554223 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
LOC554223 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06P030194:  view genomic region     (about GC identifiers)

Start:
29,759,683 bp from pter      End:
29,765,584 bp from pter
Size:
5,902 bases      Orientation:
plus strand

Selected alternative locations (see all 7):
Chr6+,NT_167245 1,060,476-1,066,207      Chr6+,NT_167247 1,060,142-1,065,864      Chr6+,NT_113891.2 1,275,793-1,281,464     
Chr6+,NT_167244 1,063,331-1,069,002      Chr6+,NT_167249 1,097,355-1,103,140      Chr6+,NT_167246 1,060,102-1,065,926     

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/TrEMBL: Q86V94 (See protein sequence)
Recommended Name: LOC554223 protein  
Size: 189 amino acids; 20903 Da

REFSEQ proteins: NP_001193972.1  

LOC554223 Human Recombinant Protein Products:

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LOC554223 Assay Products:

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Browse ELISAs at Cloud-Clone Corp.
Browse CLIAs at Cloud-Clone Corp.


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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3 InterPro protein domains:
 IPR011161 MHC_I-like_Ag-recog
 IPR011162 MHC_I/II-like_Ag-recog
 IPR001039 MHC_I_a_a1/a2

Graphical View of Domain Structure for InterPro Entry Q86V94

ProtoNet protein and cluster: Q86V94


LOC554223 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Animal Models:
   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for LOC554223
   inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for LOC554223

   genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for LOC554223
   genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for LOC554223

miRNA
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Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat LOC554223

Gene Editing
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GenScript Custom all cDNA clones Services for LOC554223
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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat LOC554223

Cell Line
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In Situ Assay
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LOC554223


(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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  --

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for LOC554223
Interactions:

    Search GeneGlobe Interaction Network for LOC554223

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for LOC554223



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for LOC554223 gene: 
NM_001207043.1  

Unigene Cluster for LOC554223:

Histocompatibility antigen-related
Hs.60856  [show with all ESTs]
Unigene Representative Sequence: AK128290
miRNA
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Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
Products:
     
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Predesigned siRNA for gene silencing in human, mouse, rat LOC554223
Clone
Products:
     
OriGene clones in human, mouse for LOC554223
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
GenScript Custom all cDNA clones Services for LOC554223
DNA2.0 Custom Codon Optimized Gene Synthesis Service for LOC554223
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat LOC554223
Primer
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Browse OriGene qPCR
Search Pre-validated RT2 qPCR Primer Assays in human, mouse, rat LOC554223
  QuantiTect SYBR Green Assays in human, mouse, rat LOC554223
  QuantiFast Probe-based Assays in human, mouse, rat LOC554223

Additional mRNA sequence: 

AK128290.1 BC051362.1 

5 DOTS entries:

DT.100000061  DT.75177312  DT.121346101  DT.40114307  DT.99971952 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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LOC554223 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AAAGAGATGC
LOC554223 Expression
About this image

LOC554223 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --

SOURCE GeneReport for Unigene cluster: Hs.60856
    Custom PCR Arrays for LOC554223
Primer
Products:
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QuantiTect SYBR Green Assays in human, mouse, rat LOC554223
QuantiFast Probe-based Assays in human, mouse, rat LOC554223
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for LOC554223

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for LOC554223 gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
rat
(Rattus norvegicus)
Mammalia LOC1025469681 RT1 class I histocompatibility antigen, AA alpha chain-like 80.14(n)
71.28(a)
  102546968  XM_006256098.1  XP_006256160.1 

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for LOC554223 gene
Selected SIMAP similar genes for LOC554223 using alignment to 1 protein entry:     Q86V94_HUMAN(see all similar genes):
HLA-Cw3    HLA-A26    HLA-G2.2    HLA-G3    HLA-G    Cw*03
HLA-A*33    HLA-A24AK    HLA-All    HLA-B*15IL    HLA-B*15UL    HLA-B*4012
HLA-B1501V2    HLA-B52v    HLA-DRB1    MHC-G    B*15    B*35

LOC554223 for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for LOC554223 (see all 250)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 6 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1816902761,2
--29757698(+) TGAAGA/CGGATG 1 -- us2k10--------
rs27350351,2
C,F,A,H--29757715(-) TGAATG/AGTAAT 1 -- us2k119Minor allele frequency- A:0.24NS EA NA WA 2344
rs1860846251,2
--29757753(+) TTCCAA/GCTGTG 1 -- us2k10--------
rs1153855721,2
C,F--29757807(+) ATTCTT/ATGATG 1 -- us2k11Minor allele frequency- A:0.02WA 118
rs1168065311,2
C,F--29757850(+) TCCCCC/TAGTTA 1 -- us2k11Minor allele frequency- T:0.02WA 118
rs1381900001,2
C--29757922(+) CAATTA/GGTTGA 1 -- us2k10--------
rs17370091,2
C,F,A,H--29757965(-) cacctT/Aattag 1 -- us2k115Minor allele frequency- A:0.44EA NS NA WA CSA 673
rs16111961,2
C,F,H--29757995(+) ttcttT/Cctgag 1 -- us2k124Minor allele frequency- C:0.24NS EA NA WA CSA 1616
rs801480141,2
C--29758003(+) GAGCAG/TAGAGA 1 -- us2k10--------
rs788906911,2
C,F--29758071(+) TGAAGA/GGGCTG 1 -- us2k11Minor allele frequency- G:0.28WA 118
rs17370081,2
C,F,A,H--29758117(-) cagggC/Ttgtgc 1 -- us2k126Minor allele frequency- T:0.08NS EA NA WA CSA 2426
rs737454551,2
C--29758186(+) AAACTG/TCATTC 1 -- us2k11Minor allele frequency- T:0.50WA 2
rs95008461,2
C--29758222(+) aggatG/Tcaaaa 1 -- us2k10--------
rs776432791,2
C--29758259(+) AACAGA/GGATTC 1 -- us2k10--------
rs787958521,2
C--29758299(+) AGGAAG/TTATAA 1 -- us2k10--------
rs1133072091,2
C,F--29758307(+) TAAGCA/GGATAA 1 -- us2k14Minor allele frequency- G:0.06WA NA 242
rs778948661,2
C--29762875(+) GAGACA/GTGTAC 1 -- int10--------
rs17370021,2
C,F,A,H--29762903(-) GTTTCC/TAGTTT 1 -- int118Minor allele frequency- T:0.22NS EA NA WA CSA 1372
rs594086971,2
C,F--29762928(+) CAATGG/TGAATT 1 -- int15Minor allele frequency- T:0.14WA CSA NA EA 362
rs16330101,2
C,F,H--29762942(-) ACGACT/AATTTT 1 -- int111Minor allele frequency- A:0.39NS EA NA WA CSA 775
rs561821021,2
C--29762955(+) AATAAT/CAAAAA 1 -- int13Minor allele frequency- C:0.20WA EA 240
rs561837321,2
C,F--29762970(+) AACTTC/TAGCAG 1 -- int15Minor allele frequency- T:0.15WA CSA NA EA 362
rs1403787691,2
C--29762995(+) CAGCAC/TCCTCC 1 -- int10--------
rs1163135051,2
F--29762998(+) CACCCT/ACCCAC 1 -- int11Minor allele frequency- A:0.04WA 118
rs562417661,2
C,F--29762999(+) ACCCTC/TCCACA 1 -- int15Minor allele frequency- T:0.15WA CSA NA EA 362
rs595088911,2
C,F--29763066(+) GTGTGA/CGTTCT 1 -- int12Minor allele frequency- C:0.06WA NA 238
rs563155621,2
C,F--29763072(+) GTTCTC/GTGTAC 1 -- int15Minor allele frequency- G:0.15WA CSA NA EA 362
rs1144623711,2
C,F--29763078(+) TGTACG/AGGGAA 1 -- int11Minor allele frequency- A:0.02NA 120
rs16330091,2
C,F,O,A,H--29763087(-) TTTTTT/AAACTT 1 -- int115Minor allele frequency- A:0.25NS EA NA WA CSA 962
rs725078381,2
C,F--29763094(+) AAAAAG/ACAGGT 1 -- int11Minor allele frequency- A:0.11EA 120
rs2007110181,2
--29763113(+) GATTT-/GGATAT 1 -- int10--------
rs352053951,2
C--29763115(+) TTTGGATAT/-  
        
ATATA
1 -- int11Minor allele frequency- -:0.50CSA 2
rs670038841,2
C--29763126(+) ATATA-/TATA  
        
CTTAT
1 -- int11Minor allele frequency- TATA:0.00NA 2
rs1164084651,2
C,F--29763175(+) AAATAC/GAAGAC 1 -- int11Minor allele frequency- G:0.01WA 118
rs1420999831,2
C--29763212(+) TAGAAC/TTGGAC 1 -- int10--------
rs1845750481,2
C--29763213(+) AGAATC/TGGACA 1 -- int10--------
rs1898108111,2
--29763238(+) CTTCAC/TAGGTT 1 -- int10--------
rs789606391,2
C--29763303(+) TCTTTA/CTTTCT 1 -- int10--------
rs92584071,2
C--29763307(+) TCTTTA/CTTTCT 1 -- int10--------
rs134375951,2
C--29763308(+) ctttcC/Tttctt 1 -- int10--------
rs92584081,2
C--29763311(+) TCTTTA/CTTTCC 1 -- int10--------
rs2016837571,2
--29763315(+) TCTTT-/CCTTCC 1 -- int10--------
rs585539451,2
C--29763316(+) CTTTCC/TTTCCT 1 -- int10--------
rs92584101,2
C--29763320(+) CCTTCC/TTTCCT 1 -- int10--------
rs92584191,2
C--29763356(+) ccttcC/Tttcct 1 -- int10--------
rs126640261,2
H--29763363(+) ccttcC/Tttctt 1 -- int10--------
rs1897958681,2
--29763365(+) CTTCTG/TTCCTT 1 -- int10--------
rs92584211,2
C,H--29763368(+) ctttcC/TttcTt 1 -- int10--------
rs1850577751,2
--29763372(+) CCTTCC/TTTTCT 1 -- int10--------
rs1910401451,2
--29763375(+) TCTTTC/TCTTTC 1 -- int10--------
rs92584231,2
C--29763510(+) TCTTTC/ATTTCT 1 -- int11Minor allele frequency- A:0.00NA 2
rs92584241,2
C--29763514(+) tctttA/C/Ttttct 1 -- int10--------
rs559347581,2
--29763515(+) CTTTCC/TTTCTT 1 -- int10--------
rs92584251,2
C--29763518(+) tctttA/C/Ttttct 1 -- int10--------
rs92584261,2
C--29763522(+) TCTTTA/C/TTTTCT 1 -- int10--------
rs92584271,2
C--29763526(+) TCTTTA/C/TTTTCT 1 -- int10--------
rs92584281,2
C--29763530(+) TCTTTA/C/TTTTTC 1 -- int10--------
rs287215761,2
C--29763549(+) GTCTCG/CCTCTT 1 -- int11Minor allele frequency- C:0.00NA 2
rs287215771,2
C,F--29763557(+) CTTGTC/TGCCCA 1 -- int11Minor allele frequency- T:0.50NA 2
rs73822051,2
C,H--29763580(+) gtggcG/Atgatc 1 -- int15Minor allele frequency- A:0.10NA WA CSA 10
rs1817444301,2
C--29763617(+) AGGTTC/TAAGCA 1 -- int10--------
rs1869774481,2
--29763633(+) CCTACA/CTCAGC 1 -- int10--------
rs117574801,2
C,H--29763708(+) gagacG/Agggtt 1 -- int12Minor allele frequency- A:0.33NA CSA 3
rs1914666281,2
--29763710(+) GACGGA/GGTTTC 1 -- int10--------
rs117579291,2
C,H--29763726(+) attgtC/Tcaggt 1 -- int12Minor allele frequency- T:0.00NA 4
rs1433501951,2
--29763732(+) CAGGTC/TGGTCT 1 -- int10--------
rs1130940491,2
C--29763761(+) TGATCC/TGCCAA 1 -- int10--------
rs31291851,2
C,F,A,H--29763762(+) gatccG/Accaac 1 -- int17Minor allele frequency- A:0.32NA WA CSA EA 132
rs117579371,2
C,A,H--29763814(+) attccC/TggccC 1 -- int14Minor allele frequency- T:0.15CSA WA NA EA 360
rs2003773201,2
--29763830(+) TCTTT-/AAAGTGT 1 -- int10--------
rs77576441,2
C--29763850(+) AAAATA/GCACCT 1 -- int10--------
rs25234161,2
C,F,H--29763860(-) ATGGCA/GCACAA 1 -- int17Minor allele frequency- G:0.04NA EA NS WA 558
rs359650511,2
C--29763882(+) TATTT-/GGAAAT 1 -- int10--------
rs1833242441,2
--29763887(+) GGAAAC/TGAAAG 1 -- int10--------
rs25234151,2
C,F,H--29763999(-) GAGATC/TCTGGT 1 -- int18Minor allele frequency- T:0.03NS EA WA NA 650
rs117579901,2
C,F,A,H--29764041(+) tttgaC/Tcctgg 1 -- int112Minor allele frequency- T:0.13NS EA WA CSA NA 1042
rs1168042551,2
C,F--29764048(+) CTGGGC/ATAATT 1 -- int11Minor allele frequency- A:0.03WA 118
rs117580191,2
C,A,H--29764082(+) atacaG/Atgttc 1 -- int14Minor allele frequency- A:0.15WA NA EA 360
rs17370011,2
C,H--29764133(-) tatcaA/Cattct 1 -- int12Minor allele frequency- C:0.03NA 122
rs734037271,2
C--29764170(+) AAGTGA/GATTAA 1 -- int10--------
rs351242711,2
C--29764189(+) AAAAA-/AGCATT 1 -- int11Minor allele frequency- A:0.00NA 2
rs1880926281,2
--29764203(+) AAGCAC/TTGTTG 1 -- int10--------
rs1154928951,2
C--29764270(+) AAGAAC/TGGAAA 1 -- int10--------
rs1444714601,2
--29764301(+) CAGCAA/GTGATA 1 -- int10--------
rs77580221,2
C,F,H--29764308(+) gatagA/C/Gagcac 1 -- int14NS EA 420
rs16330081,2
C,F--29764342(-) actccA/C/Tgtatg 1 -- int111NA WA CSA EA 373
rs16330071,2
C,F,A--29764363(-) gatgtG/Agtaga 1 -- int19Minor allele frequency- A:0.24NA WA EA 370
rs16330061,2
C,F,A--29764374(-) tttttT/Aaatta 1 -- int19Minor allele frequency- A:0.24NA WA CSA EA 370
rs1156371441,2
C--29764382(+) AAACAC/TAGTGA 1 -- int10--------
rs1914111311,2
--29764427(+) AGCCAC/GTTATT 1 -- int10--------
rs117580871,2
C,F,H--29764443(+) atcttG/Attcct 1 -- int117Minor allele frequency- A:0.12NS EA NA WA CSA 2122
rs16330051,2
C,F,A,H--29764472(-) gggtaG/Agcaga 1 -- int123Minor allele frequency- A:0.15NS EA NA WA 2760
rs117580561,2
C,F,H--29764486(+) ccaaaC/Gaaatt 1 -- int110Minor allele frequency- G:0.16NS EA WA NA CSA 786
rs1134461921,2
C--29764534(+) TGAGAC/TTCACA 1 -- int11Minor allele frequency- T:0.50WA 2
rs17370001,2
C,F,A,H--29764548(-) tgcagT/Ctagaa 1 -- int114Minor allele frequency- C:0.22NS EA NA WA CSA 782
rs1118039501,2
C--29764568(+) GATTAG/AGCAAA 1 -- int11Minor allele frequency- A:0.50WA 2
rs1136207311,2
C--29764595(+) TGAGTC/AAGAAA 1 -- int11Minor allele frequency- A:0.50WA 2
rs1157947461,2
C--29764626(+) TAAACC/TGAATT 1 -- int10--------
rs1155635271,2
C,F--29764635(+) TTAGAA/CACTTC 1 -- int11Minor allele frequency- C:0.02WA 118
rs117581361,2
C,F,A,H--29764647(+) gaagaG/Aaaaca 1 -- int18Minor allele frequency- A:0.15NS EA WA NA CSA 500
rs17369991,2
C,F,A,H--29764656(-) aactaC/Tgtttg 1 -- int116Minor allele frequency- T:0.22NS EA NA WA CSA 651
rs16330041,2
C,F--29764663(-) CAATCA/GTAACT 1 -- int112Minor allele frequency- G:0.24NA WA CSA EA 376
rs1149747001,2
C,F--29764674(+) TAAAGG/TCATTA 1 -- int11Minor allele frequency- T:0.02WA 118
rs1824435791,2
--29764680(+) CATTAC/TTGTAT 1 -- int10--------
rs117512821,2
C,F,H--29764707(+) gacacT/Gttaat 1 -- int118Minor allele frequency- G:0.11NS EA NA WA CSA 2244
rs16330031,2
C,F,A,H--29764759(-) ttaatA/Gttctc 1 -- int112Minor allele frequency- G:0.43NA WA CSA EA 375
rs348240171,2
C--29764779(+) TTTAC-/AAAAAA 1 -- int10--------
rs3702449781,2
C--29764780(+) TTTAC-/AAAAAA 1 -- int10--------
rs1163309631,2
C,F--29764803(+) TTGTTG/ATATCT 1 -- int11Minor allele frequency- A:0.01WA 118
rs1994979301,2
--29764835(+) AATCA-/TTACTTT 1 -- int10--------
rs2009047891,2
C--29764867(+) TTAAAA/GAAAGT 1 -- int10--------
rs2011897191,2
C--29764902(+) CAAAAC/TCCTGA 1 -- int10--------
rs1142865881,2
C--29764938(+) ACATGC/TTTATA 1 -- int10--------
rs1168300571,2
C--29764939(+) CATGTA/TTATAA 1 -- int10--------
rs1143841971,2
C,F--29764968(+) TTTCCA/GGAAGT 1 -- spa11Minor allele frequency- G:0.02WA 118
rs734037431,2
C--29764971(+) CCAGAA/GGTGCA 2 * syn10--------
rs1153231781,2
C,F--29764978(+) TGCAGC/TTTCAT 1 -- ut311Minor allele frequency- T:0.02WA 118
rs737475181,2
C,F--29764998(+) GTTCGT/CGTGGC 1 -- ut314Minor allele frequency- C:0.20WA CSA EA 242
rs16309691,2
C,F,A,H--29765001(-) caggcC/Tacacg 1 -- ut3124Minor allele frequency- T:0.26NS EA NA WA CSA 2348
rs94686221,2
C,F,A,H--29765003(+) tgtggC/Tctgga 1 -- ut317Minor allele frequency- T:0.03NS EA WA NA 758
rs94686231,2
C,F,A,H--29765020(+) gactcA/Gcttct 1 -- ut3121Minor allele frequency- G:0.05NS EA NA WA 2764
rs16330021,2
C,F,A,H--29765047(-) tattaT/Agtcag 1 -- ut3129Minor allele frequency- A:0.26NS EA NA WA CSA 2778
rs759046181,2
C--29765055(+) ATAGTC/TTGTGA 1 -- ut311Minor allele frequency- T:0.50WA 2
rs752205931,2
C--29765061(+) TGTGAC/TTCTGG 1 -- ut311Minor allele frequency- T:0.50WA 2
rs2010948011,2
--29765077(+) AACAT-/AAGAAGAC 1 -- cds10--------
rs25234141,2
C,F,H--29765087(-) ACTTCA/GGTGAG 1 -- ut3117Minor allele frequency- G:0.08NS EA NA WA 2136
rs2021852861,2
C--29765087(+) CTCAC-/TGAAGT 1 -- ut310--------
rs1467615391,2
--29765123(+) GGAATC/TATGAG 1 -- ut310--------
rs725078391,2
C,F--29765145(+) GCTGGC/TTGTTG 1 -- ut315Minor allele frequency- T:0.13WA CSA NA EA 362
rs2002981731,2
--29765168(+) CCTGT-/GGAAA 
        
GGTCC
1 -- ut310--------
rs737475221,2
C,F--29765240(+) AGCCAT/CGTGAG 1 -- ut315Minor allele frequency- C:0.14WA CSA NA EA 362
rs1504039721,2
C--29765257(+) TTGTGA/TCTTGT 1 -- ut310--------
rs16330011,2
C,F,A,H--29765270(-) gggccG/Agggat 1 -- ut3112Minor allele frequency- A:0.37EA NS WA NA CSA 537
rs93667491,2
C,F--29765271(+) tccccG/Agcccc 1 -- ut316Minor allele frequency- A:0.27NA WA EA 364
rs1866298341,2
--29765284(+) TTGAGC/TCCTCA 1 -- ut310--------
rs737475241,2
C--29765285(+) TGAGCC/GCTCAG 1 -- ut313Minor allele frequency- G:0.21WA EA 240
rs16290681,2
C,F,A,H--29765291(-) aatcaT/Cctgag 1 -- ut3122Minor allele frequency- C:0.26NS EA NA WA CSA 2247
rs11346641,2
C,F--29765325(+) GCAACA/G/TTTGTG 2 -- ut316WA CSA NA EA 364
rs1491759311,2
--29765425(+) GAGCTC/GCTAAG 1 -- ut310--------
rs94615561,2
C,F,H--29765452(+) atgcaG/Tcagta 1 -- ut3110Minor allele frequency- T:0.15NS WA CSA NA EA 1250
rs737475251,2
C,F--29765490(+) GATGAA/GTCACT 1 -- ut315Minor allele frequency- G:0.15WA CSA NA EA 362
rs1925237781,2
--29765557(+) TAATAG/TTTAAT 1 -- ut310--------
rs725078401,2
C--29765562(+) TTTAAG/TAAAAA 1 -- ut311Minor allele frequency- T:0.50WA 2
rs94686241,2
F,H--29765574(+) ttCCAT/AGTATA 1 -- ut316Minor allele frequency- A:0.05NS EA NA WA 540
rs725078411,2
C--29765583(+) TATATT/AAGATA 1 -- ut311Minor allele frequency- A:0.50WA 2
rs1847879871,2
--29765586(+) ATAAGA/GTATAT 1 -- spd10--------
rs1160786981,2
C--29765595(+) ATTTTA/GTTATC 1 -- int10--------
rs1147253571,2
C--29765630(+) CTTCAA/GCTTGT 1 -- int10--------
rs1162054741,2
--29765631(+) TTCAAC/TTTGTA 1 -- int10--------
rs725078421,2
C--29765652(+) AAACAT/CGAAAG 1 -- int15Minor allele frequency- C:0.17WA CSA NA EA 361
rs92807031,2
C,F--29765670(+) GGCTAT/-GCTAG 1 -- int12Minor allele frequency- -:0.50NA CSA 4
rs3693177181,2
C--29765671(+) GGCTA-/TGCTAG 1 -- int10--------
rs679507901,2
C--29765672(+) GCTAG-/TCTAGG 1 -- int10--------
rs17369981,2
C,F,A,H--29765716(-) ctgagA/Taacca 1 -- int114Minor allele frequency- T:0.43NS EA NA WA CSA 783
rs1130495541,2
C--29765727(+) GTTACC/TCCAGT 1 -- int11Minor allele frequency- T:0.50WA 2
rs1411477851,2
--29765811(+) ACTTTA/TAGATG 1 -- int10--------
rs2002391101,2
C--29765832(+) TGCTTA/GGACGG 1 -- int10--------
rs117592711,2
C,F,H--29765835(+) ttagaC/Tggtcc 1 -- int110Minor allele frequency- T:0.15NS EA NA WA CSA 784
rs117545771,2
C,F,H--29765860(+) ctgaaC/Aaggac 1 -- int12Minor allele frequency- A:0.50WA CSA 4
rs16330001,2
C,F,A--29765865(-) acccaA/Gtcctt 1 -- int17Minor allele frequency- G:0.43NA WA CSA 14
rs25234131,2
C--29765872(-) aggaaA/Gaaccc 1 -- int10--------
rs2017313401,2
C--29765880(+) CCTGAC/GAATAG 1 -- int10--------
rs94615571,2
C,F,H--29765925(+) GCTTCC/TTCCAC 1 -- int14Minor allele frequency- T:0.04NS EA 420
rs92584341,2
C,F,H--29765929(+) CCTCCA/GCTTTG 1 -- int18Minor allele frequency- G:0.06NS EA CSA WA NA 660
rs725078441,2
C--29765932(+) CCACTG/TTGGGC 1 -- int11Minor allele frequency- T:0.50CSA 2
rs1433877691,2
C--29765946(+) GAAAAC/TGGAGG 1 -- int10--------
rs802302951,2
C--29765949(+) AATGGT/AGGGAT 1 -- int11Minor allele frequency- A:0.50CSA 2
rs1114120831,2
C--29765981(+) GCCAAC/TAGGAA 1 -- int11Minor allele frequency- T:0.50WA 2
rs752920941,2
C,F--29765993(+) TAGAAG/ACCCTC 1 -- int12Minor allele frequency- A:0.50CSA 4
rs64570421,2
C,F,A--29766021(+) tagccC/Tgaagg 1 -- int12Minor allele frequency- T:0.50NA 4
rs1455938521,2
--29766069(+) ATTCTA/GCCAAC 1 -- int10--------
rs561042491,2
C,F--29766070(+) TTCTGC/GCAACA 1 -- int11Minor allele frequency- G:0.07NA 120
rs25237551,2
C,F,H--29766082(-) ttatgT/Cagagt 1 -- int14Minor allele frequency- C:0.03NS EA WA 412
rs2008589211,2
----29765593(+) ATATTG/TTATTA 1 -- int10--------
rs2014835641,2
----29764528(+) GAGGTA/GTGAGA 1 -- int10--------
rs760108141,2
----29763588(+) ATCTCG/AGTTCA 1 -- int11Minor allele frequency- A:0.00NA 2
rs3736552811,2
----29764199(+) AAAAA-/AGCATT 1 -- int10--------
rs92584131,2
----29763332(+) CCTTCC/TTTCCT 1 -- int10--------
rs287215751,2
----29763540(+) CGAGAC/TGGAGT 1 -- int10--------
rs774071021,2
----29763631(+) CTCCTG/ACCTCA 1 -- int11Minor allele frequency- A:0.00NA 2
rs792398311,2
----29763492(+) TTTCTC/TTCTTT 1 -- int11Minor allele frequency- T:0.00NA 2

HapMap Linkage Disequilibrium report for LOC554223 (29759683 - 29765584 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for LOC554223 (see all 15):    About this table    
Variant IDTypeSubtypePubMed ID
dgv1086e199CNV Deletion23128226
esv2731774CNV Deletion23290073
esv2591572CNV Deletion19546169
esv2731768CNV Deletion23290073
esv2731772CNV Deletion23290073
dgv1039e201CNV Deletion23290073
dgv6446n71CNV Loss21882294
nsv508397CNV Loss20534489
nsv883539CNV Loss21882294
nsv883537CNV Loss21882294

Site Specific Mutation Identification with PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for LOC554223 gene integrated from 10 sources:
(articles sorted by number of sources associating them with LOC554223)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (J. Biol. Chem. 2011)
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  3. Evidence that humoral allograft rejection in lung transplant patients is not histocompatibility antigen-related. (PubMed id 14510700)9 Magro C.M....Ross P. (Am. J. Transplant. 2003)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 554223 euGenes: HUgn554223

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for LOC554223 gene:
Search GeneIP for patents involving LOC554223

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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