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Aliases for LOC554206 Gene

Aliases for LOC554206 Gene

  • Leucine Carboxyl Methyltransferase 1 Pseudogene 3
  • AC133552.2 5

External Ids for LOC554206 Gene

Previous GeneCards Identifiers for LOC554206 Gene

  • GC16U900509
  • GC16P024951

Summaries for LOC554206 Gene

GeneCards Summary for LOC554206 Gene

LOC554206 (Leucine Carboxyl Methyltransferase 1 Pseudogene) is a Pseudogene.

Additional gene information for LOC554206 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC554206 Gene

Genomics for LOC554206 Gene

Regulatory Elements for LOC554206 Gene

Enhancers for LOC554206 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H025256 1.2 ENCODE 62.7 +226.1 226122 2 MLX ZFP64 FEZF1 DMAP1 ZNF416 ZNF143 ZNF548 SP3 NFYC MEF2D RBBP6 LOC554206 HMGN2P3 SCML2P2 ENSG00000261669 ARHGAP17 ZKSCAN2 ENSG00000263326 LCMT1-AS2 LOC100421173
GH16H025047 2 FANTOM5 Ensembl ENCODE dbSUPER 23.2 +18.6 18577 5 HDGF PKNOX1 ARNT ZFP64 SIN3A FEZF1 ZNF2 ZNF143 ZNF207 FOS RBBP6 HMGN2P3 ENSG00000263326 ENSG00000261669 SCML2P2 LOC554206 ARHGAP17 ZKSCAN2 LOC100421173 LCMT1-AS2
GH16H025009 1.6 Ensembl ENCODE dbSUPER 16.7 -16.5 -16487 11 HDGF PKNOX1 FOXA2 ZFP64 ARID4B SIN3A YY1 SLC30A9 ZNF766 ZNF207 RBBP6 LOC554206 ENSG00000261669 LCMT1-AS2 LINC02175 ARHGAP17 GC16M024999 PIR57337
GH16H025029 1.3 ENCODE dbSUPER 13.9 -0.5 -508 2 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A DMAP1 YY1 ETS1 ZNF766 RBBP6 LOC554206 PIR61012
GH16H024728 1.4 ENCODE dbSUPER 10.5 -301.1 -301067 4 PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF143 ZNF207 FOS RBBP6 SLC5A11 ARHGAP17 LCMT1-AS2 LOC554206 ENSG00000261669 SCML2P2 GC16M024776 LINC01567
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC554206 on UCSC Golden Path with GeneCards custom track

Promoters for LOC554206 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000084695 59 1201 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A DMAP1 YY1 ETS1 ZNF766

Genomic Location for LOC554206 Gene

Chromosome:
16
Start:
25,031,741 bp from pter
End:
25,058,109 bp from pter
Size:
26,369 bases
Orientation:
Plus strand

Genomic View for LOC554206 Gene

Genes around LOC554206 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC554206 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC554206 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC554206 Gene

Proteins for LOC554206 Gene

Post-translational modifications for LOC554206 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC554206 Gene

Domains & Families for LOC554206 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC554206 Gene

Function for LOC554206 Gene

Phenotypes From GWAS Catalog for LOC554206 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for LOC554206
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC554206 Gene

Localization for LOC554206 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC554206 Gene

Pathways & Interactions for LOC554206 Gene

SuperPathways for LOC554206 Gene

No Data Available

Interacting Proteins for LOC554206 Gene

Gene Ontology (GO) - Biological Process for LOC554206 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC554206 Gene

Drugs & Compounds for LOC554206 Gene

No Compound Related Data Available

Transcripts for LOC554206 Gene

mRNA/cDNA for LOC554206 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC554206 Gene

Leucine carboxyl methyltransferase 1 pseudogene:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for LOC554206
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for LOC554206 Gene

No ASD Table

Relevant External Links for LOC554206 Gene

GeneLoc Exon Structure for
LOC554206

Expression for LOC554206 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC554206 Gene

SOURCE GeneReport for Unigene cluster for LOC554206 Gene:

Hs.552959
genes like me logo Genes that share expression patterns with LOC554206: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC554206 Gene

Orthologs for LOC554206 Gene

Evolution for LOC554206 Gene

ENSEMBL:
Gene Tree for LOC554206 (if available)
TreeFam:
Gene Tree for LOC554206 (if available)

No data available for Orthologs for LOC554206 Gene

Paralogs for LOC554206 Gene

No data available for Paralogs for LOC554206 Gene

Variants for LOC554206 Gene

Sequence variations from dbSNP and Humsavar for LOC554206 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000029951 -- 25,030,483(+) GGTGT(A/G)TATTC upstream-variant-2KB
rs1001091656 -- 25,030,490(+) ATTCT(G/T)GGTTT upstream-variant-2KB
rs1001201959 -- 25,029,858(+) GGATT(A/C)CAGGT upstream-variant-2KB
rs1001654687 -- 25,030,048(+) ACCCA(A/G)TAAGT upstream-variant-2KB
rs1002308318 -- 25,030,852(+) ACACC(C/T)GACAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LOC554206 Gene

Variant ID Type Subtype PubMed ID
esv2758638 CNV gain+loss 17122850
nsv833175 CNV loss 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC554206 Gene

Disorders for LOC554206 Gene

Relevant External Links for LOC554206

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC554206

No disorders were found for LOC554206 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC554206 Gene

Publications for LOC554206 Gene

  1. The palmitoyl acyltransferase HIP14 shares a high proportion of interactors with huntingtin: implications for a role in the pathogenesis of Huntington's disease. (PMID: 24705354) Butland SL … Hayden MR (Human molecular genetics 2014) 3 60
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LOC554206 Gene

Sources for LOC554206 Gene

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