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Aliases for LOC541473 Gene

Aliases for LOC541473 Gene

  • FK506 Binding Protein 6, 36kDa Pseudogene 3
  • AC211486.1 5

External Ids for LOC541473 Gene

Previous GeneCards Identifiers for LOC541473 Gene

  • GC07U901536
  • GC07M074666
  • GC07M074859
  • GC07M075022

Summaries for LOC541473 Gene

GeneCards Summary for LOC541473 Gene

LOC541473 (FK506 Binding Protein 6, 36kDa Pseudogene) is a Pseudogene.

Additional gene information for LOC541473 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC541473 Gene

Genomics for LOC541473 Gene

Regulatory Elements for LOC541473 Gene

Enhancers for LOC541473 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H075485 1 ENCODE 7.9 -90.7 -90688 1 HDGF ATF1 ARNT ARID4B SIN3A DMAP1 YY1 ETS1 GLIS2 ELK1 STAG3L1 LOC541473 SPDYE5 ENSG00000242073 POM121C
GH07H075427 0.7 Ensembl ENCODE 11.1 -33.1 -33071 3 PKNOX1 ELF1 STAG3L1 LOC541473 TRIM73 SPDYE12P GC07P075435 PIR40068
GH07H076068 1.1 Ensembl ENCODE 4.9 -674.0 -674031 1 CTCF PKNOX1 RB1 NFIB TBL1XR1 SIN3A NFXL1 RAD21 GATA3 CTBP1 STYXL1 MDH2 CCL24 ENSG00000230882 PMS2P3 STAG3L1 NSUN5P1 GTF2IRD2B SRRM3 LOC541473
GH07H075394 0.2 Ensembl 0.7 -0.2 -174 1 LOC541473 NSUN5P1
GH07H075403 0.2 Ensembl 0.4 -8.7 -8740 1 LOC541473 NSUN5P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC541473 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC541473 Gene

Chromosome:
7
Start:
75,391,949 bp from pter
End:
75,395,461 bp from pter
Size:
3,513 bases
Orientation:
Minus strand

Genomic View for LOC541473 Gene

Genes around LOC541473 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC541473 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC541473 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC541473 Gene

Proteins for LOC541473 Gene

Post-translational modifications for LOC541473 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC541473 Gene

Domains & Families for LOC541473 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC541473 Gene

Function for LOC541473 Gene

Phenotypes From GWAS Catalog for LOC541473 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC541473 Gene

Localization for LOC541473 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC541473 Gene

Pathways & Interactions for LOC541473 Gene

SuperPathways for LOC541473 Gene

No Data Available

Interacting Proteins for LOC541473 Gene

Gene Ontology (GO) - Biological Process for LOC541473 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC541473 Gene

Drugs & Compounds for LOC541473 Gene

No Compound Related Data Available

Transcripts for LOC541473 Gene

mRNA/cDNA for LOC541473 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC541473 Gene

FK506 binding protein 6, 36kDa pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC541473 Gene

No ASD Table

Relevant External Links for LOC541473 Gene

GeneLoc Exon Structure for
LOC541473

Expression for LOC541473 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC541473 Gene

mRNA differential expression in normal tissues according to GTEx for LOC541473 Gene

This gene is overexpressed in Testis (x35.5).

SOURCE GeneReport for Unigene cluster for LOC541473 Gene:

Hs.695009
genes like me logo Genes that share expression patterns with LOC541473: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC541473 Gene

Orthologs for LOC541473 Gene

Evolution for LOC541473 Gene

ENSEMBL:
Gene Tree for LOC541473 (if available)
TreeFam:
Gene Tree for LOC541473 (if available)

No data available for Orthologs for LOC541473 Gene

Paralogs for LOC541473 Gene

No data available for Paralogs for LOC541473 Gene

Variants for LOC541473 Gene

Sequence variations from dbSNP and Humsavar for LOC541473 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs112144080 -- 75,392,650(+) CGGGA(C/G)GCTGA intron-variant
rs112728736 -- 75,396,500(+) GCGTA(A/G)GCTAC intron-variant, upstream-variant-2KB
rs147579915 -- 75,393,126(+) AGGCT(A/G)CAGTG intron-variant
rs151153764 -- 75,391,723(+) TGATT(C/T)GCCCG downstream-variant-500B
rs186215435 -- 75,391,919(+) TCCAG(C/T)AGCTG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for LOC541473 Gene

Variant ID Type Subtype PubMed ID
dgv6464n100 CNV gain 25217958
esv2759537 CNV gain+loss 17122850
esv2764061 CNV gain+loss 21179565
esv34349 CNV gain 17911159
esv3613678 CNV loss 21293372
nsv1018175 CNV gain 25217958
nsv1018460 CNV gain+loss 25217958
nsv1023115 CNV gain 25217958
nsv1029162 CNV loss 25217958
nsv1030447 CNV loss 25217958
nsv1161563 CNV deletion 26073780
nsv428171 CNV gain 18775914
nsv469664 CNV loss 16826518
nsv520573 CNV gain+loss 19592680
nsv528969 CNV gain 19592680
nsv607478 CNV loss 21841781
nsv831025 CNV loss 17160897
nsv831035 CNV loss 17160897
nsv970875 CNV duplication 23825009
nsv981535 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC541473 Gene

Disorders for LOC541473 Gene

Relevant External Links for LOC541473

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC541473

No disorders were found for LOC541473 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC541473 Gene

Publications for LOC541473 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LOC541473 Gene

Sources for LOC541473 Gene

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