Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC541472 Gene

Subcategory (RNA class) for LOC541472 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC541472 Gene

  • Uncharacterized LOC541472 3
  • AC073072.5 5

External Ids for LOC541472 Gene

Previous GeneCards Identifiers for LOC541472 Gene

  • GC07U901535
  • GC07M022732
  • GC07M022766

Summaries for LOC541472 Gene

GeneCards Summary for LOC541472 Gene

LOC541472 (Uncharacterized LOC541472) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC541472 Gene

Genomics for LOC541472 Gene

Regulatory Elements for LOC541472 Gene

Enhancers for LOC541472 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G022695 1.8 FANTOM5 Ensembl ENCODE dbSUPER 38.1 +30.1 30141 3.4 HDAC1 HDGF PKNOX1 NFRKB ZBTB40 TCF12 ETV6 CREM ZNF680 CEBPB LOC541472 IL6 GC07P022719 LOC401312
GH07G022724 1.3 ENCODE dbSUPER 43 +0.6 579 5.1 PKNOX1 SIN3A FEZF1 ZNF766 GLIS2 CBX5 FOS DEK REST TBX21 LOC541472 FAM126A STEAP1B LOC100506178 IL6
GH07G022702 1.6 FANTOM5 Ensembl ENCODE dbSUPER 28.8 +24.2 24243 2.2 HDAC1 ZNF146 ARNT GTF2E2 NFRKB TEAD4 ZNF175 FOXK2 POLR2A KDM5B LOC541472 IL6 GC07P022719 LOC401312
GH07G022730 0.9 Ensembl ENCODE dbSUPER 38.5 -3.4 -3374 1.6 POLR2A PRDM1 LOC541472 FAM126A MTCYBP42
GH07G022716 1.7 FANTOM5 Ensembl ENCODE dbSUPER 19.1 +9.6 9584 2.7 TBP PKNOX1 ATF1 NFRKB FOS SMARCC1 CAVIN1 CEBPB ZNF592 CREB3 LOC541472 STEAP1B FAM126A GC07P022719 LOC401312
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC541472 on UCSC Golden Path with GeneCards custom track

Promoters for LOC541472 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000209422 520 601 TBP HDAC1 PKNOX1 GLIS2 FOS SMARCC1 ZNF362 CEBPB USF2 ZNF398

Genomic Location for LOC541472 Gene

Chromosome:
7
Start:
22,725,395 bp from pter
End:
22,727,620 bp from pter
Size:
2,226 bases
Orientation:
Minus strand

Genomic View for LOC541472 Gene

Genes around LOC541472 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC541472 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC541472 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC541472 Gene

Proteins for LOC541472 Gene

  • Protein details for LOC541472 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q8N6X1
    Recommended name:
    LOC541472 protein
    Protein Accession:
    Q8N6X1

    Protein attributes for LOC541472 Gene

    Size:
    51 amino acids
    Molecular mass:
    5678 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC541472 Gene

Post-translational modifications for LOC541472 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC541472 Gene

Domains & Families for LOC541472 Gene

Protein Domains for LOC541472 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LOC541472 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC541472: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC541472 Gene

Function for LOC541472 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC541472 Gene

Localization for LOC541472 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC541472 Gene

Pathways & Interactions for LOC541472 Gene

SuperPathways for LOC541472 Gene

No Data Available

Interacting Proteins for LOC541472 Gene

Gene Ontology (GO) - Biological Process for LOC541472 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC541472 Gene

Drugs & Compounds for LOC541472 Gene

No Compound Related Data Available

Transcripts for LOC541472 Gene

mRNA/cDNA for LOC541472 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC541472 Gene

Uncharacterized LOC541472:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC541472 Gene

No ASD Table

Relevant External Links for LOC541472 Gene

GeneLoc Exon Structure for
LOC541472

Expression for LOC541472 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC541472 Gene

mRNA expression in normal human tissues for LOC541472 Gene

mRNA differential expression in normal tissues according to GTEx for LOC541472 Gene

This gene is overexpressed in Adipose - Visceral (Omentum) (x4.9) and Spleen (x4.8).

SOURCE GeneReport for Unigene cluster for LOC541472 Gene:

Hs.512234
genes like me logo Genes that share expression patterns with LOC541472: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC541472 Gene

Orthologs for LOC541472 Gene

Evolution for LOC541472 Gene

ENSEMBL:
Gene Tree for LOC541472 (if available)
TreeFam:
Gene Tree for LOC541472 (if available)

No data available for Orthologs for LOC541472 Gene

Paralogs for LOC541472 Gene

No data available for Paralogs for LOC541472 Gene

Variants for LOC541472 Gene

Sequence variations from dbSNP and Humsavar for LOC541472 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1002148681 -- 22,727,152(+) AATAT(C/T)AGAGT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1002676051 -- 22,727,603(+) GTACA(C/T)CCTCG intron-variant, nc-transcript-variant, reference, missense
rs1002746567 -- 22,725,521(+) GCAAG(C/T)TCACA nc-transcript-variant, upstream-variant-2KB
rs1003092646 -- 22,725,239(+) GGAAG(A/G)CGAGA intron-variant, upstream-variant-2KB
rs1004035389 -- 22,727,862(+) ATGCC(A/C)ACCTT intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC541472 Gene

Disorders for LOC541472 Gene

Relevant External Links for LOC541472

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC541472

No disorders were found for LOC541472 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC541472 Gene

Publications for LOC541472 Gene

  1. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC541472 Gene

Sources for LOC541472 Gene

Content
Loading form....