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Aliases for LOC441666 Gene

Aliases for LOC441666 Gene

  • Zinc Finger Protein 91 Pseudogene 3
  • RP11-313J2.1 5

External Ids for LOC441666 Gene

Previous GeneCards Identifiers for LOC441666 Gene

  • GC14M018241
  • GC10M042150
  • GC10M042827

Summaries for LOC441666 Gene

GeneCards Summary for LOC441666 Gene

LOC441666 (Zinc Finger Protein 91 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC441666 Gene

Genomics for LOC441666 Gene

Regulatory Elements for LOC441666 Gene

Enhancers for LOC441666 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G042367 0.9 ENCODE 35.9 +0.1 88 1.4 TBP HDAC1 PKNOX1 ATF1 CBX3 CREB3L1 NFRKB DEAF1 ZBTB40 FOS LOC441666 BMS1 GC10M042434 PIR37552
GH10G042187 0.4 Ensembl 19.2 +180.0 180045 0.8 ATF2 LOC441666 ZNF33B IGKV1OR10-1 ENSG00000271650
GH10G042932 1 Ensembl ENCODE 7.6 -565.7 -565697 2.3 NFIB SUZ12 ETV1 INSM2 CEBPG ZIC2 FOSL1 ZNF121 ZFHX2 ZNF316 RET CSGALNACT2 LOC441666 ENSG00000259869 ZNF33B GC10M042909 LINC01264
GH10G042865 1.2 Ensembl ENCODE 5.7 -498.6 -498619 1.8 PKNOX1 RB1 NFIB ZSCAN4 ZNF76 KLF17 SIN3A ZNF2 ZNF48 ZBTB7B ZNF32-AS1 ZNF32-AS2 ENSG00000273008 ZNF37BP ZNF239 ENSG00000259869 BMS1 LOC441666 ZNF33B GC10P042865
GH10G042781 1.2 ENCODE 5.3 -414.7 -414716 2.2 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SP3 NFYC BMS1 EIF3LP2 ZNF32-AS2 ZNF487 LINC00839 ENSG00000259869 LOC441666 GC10M042762
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC441666 on UCSC Golden Path with GeneCards custom track

Promoters for LOC441666 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000027146 444 1200 TBP HDAC1 PKNOX1 CBX3 DEAF1 ZBTB40 FOS CREM CEBPZ NFYA

Transcription factor binding sites by QIAGEN in the LOC441666 gene promoter:

Genomic Location for LOC441666 Gene

Chromosome:
10
Start:
42,331,866 bp from pter
End:
42,368,045 bp from pter
Size:
36,180 bases
Orientation:
Minus strand

Genomic View for LOC441666 Gene

Genes around LOC441666 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC441666 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC441666 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC441666 Gene

Proteins for LOC441666 Gene

Post-translational modifications for LOC441666 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC441666 Gene

Domains & Families for LOC441666 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC441666 Gene

Function for LOC441666 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC441666 Gene

Localization for LOC441666 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC441666 Gene

Pathways & Interactions for LOC441666 Gene

SuperPathways for LOC441666 Gene

No Data Available

Interacting Proteins for LOC441666 Gene

Gene Ontology (GO) - Biological Process for LOC441666 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC441666 Gene

Drugs & Compounds for LOC441666 Gene

No Compound Related Data Available

Transcripts for LOC441666 Gene

mRNA/cDNA for LOC441666 Gene

(6) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC441666 Gene

Zinc finger protein 91 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC441666 Gene

No ASD Table

Relevant External Links for LOC441666 Gene

GeneLoc Exon Structure for
LOC441666

Expression for LOC441666 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC441666 Gene

SOURCE GeneReport for Unigene cluster for LOC441666 Gene:

Hs.255729
genes like me logo Genes that share expression patterns with LOC441666: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC441666 Gene

Orthologs for LOC441666 Gene

Evolution for LOC441666 Gene

ENSEMBL:
Gene Tree for LOC441666 (if available)
TreeFam:
Gene Tree for LOC441666 (if available)

No data available for Orthologs for LOC441666 Gene

Paralogs for LOC441666 Gene

No data available for Paralogs for LOC441666 Gene

Variants for LOC441666 Gene

Sequence variations from dbSNP and Humsavar for LOC441666 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000082060 -- 42,334,624(+) CTCTC(-/CAAT)CAGAT nc-transcript-variant
rs1000285390 -- 42,355,317(+) ATATT(G/T)AAGTT intron-variant
rs1000319439 -- 42,367,997(+) CCCCC(A/G)CCAAC nc-transcript-variant
rs1000338635 -- 42,355,661(+) GTGTA(C/T)TGATG intron-variant
rs1000615183 -- 42,369,383(+) TGAAC(C/T)CCATC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LOC441666 Gene

Variant ID Type Subtype PubMed ID
dgv1097n54 CNV gain 21841781
dgv1098n54 CNV gain 21841781
dgv1102n54 CNV gain 21841781
dgv1103n54 CNV gain 21841781
dgv113e214 CNV gain 21293372
dgv717n100 CNV gain 25217958
dgv718n100 CNV gain 25217958
dgv719n100 CNV gain 25217958
dgv78n27 CNV gain 19166990
dgv79n27 CNV gain 19166990
esv2760078 CNV gain 21179565
esv2762858 CNV loss 21179565
esv3576449 CNV gain 25503493
esv3623002 CNV gain 21293372
esv3623003 CNV loss 21293372
esv3891789 CNV gain 25118596
esv3891790 CNV gain 25118596
esv3891791 CNV gain 25118596
esv3891794 CNV loss 25118596
esv3891795 CNV gain 25118596
nsv1036549 CNV loss 25217958
nsv1042764 CNV gain 25217958
nsv433409 CNV gain 18776910
nsv433411 CNV gain 18776910
nsv466877 CNV gain 19166990
nsv470932 CNV gain 18288195
nsv471665 CNV gain 15918152
nsv550672 CNV gain 21841781
nsv550680 CNV loss 21841781
nsv831839 CNV loss 17160897
nsv947879 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC441666 Gene

Disorders for LOC441666 Gene

Relevant External Links for LOC441666

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC441666

No disorders were found for LOC441666 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC441666 Gene

Publications for LOC441666 Gene

  1. Juxtacentromeric region of human chromosome 21: a boundary between centromeric heterochromatin and euchromatic chromosome arms. (PMID: 12909339) Brun M.-E. … De Sario A. (Gene 2003) 3 64

Products for LOC441666 Gene

Sources for LOC441666 Gene

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