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Aliases for LOC401312 Gene

Subcategory (RNA class) for LOC401312 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC401312 Gene

  • Uncharacterized LOC401312 3
  • AC002480.2 5

External Ids for LOC401312 Gene

Previous GeneCards Identifiers for LOC401312 Gene

  • GC07M022353
  • GC07M022384
  • GC07U901781

Summaries for LOC401312 Gene

GeneCards Summary for LOC401312 Gene

LOC401312 (Uncharacterized LOC401312) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC401312 Gene

Genomics for LOC401312 Gene

Regulatory Elements for LOC401312 Gene

Enhancers for LOC401312 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G022659 1.5 Ensembl ENCODE dbSUPER 0.7 +3.0 3010 5.3 HDGF ATF1 PKNOX1 ARNT YY1 ZNF766 GATA2 FOS CAVIN1 ZNF592 LOC541472 STEAP1B IL6 CLK2P1 LOC401312 ENSG00000225541
GH07G022665 1.5 Ensembl ENCODE dbSUPER 0.7 -2.1 -2060 3.8 HDGF PKNOX1 ATF1 ARNT AGO1 TCF12 ZNF766 ELK1 GATA2 FOS LOC541472 STEAP1B IL6 LOC401312 GC07P022719
GH07G022669 1 ENCODE dbSUPER 0.7 -4.4 -4374 0.2 ZNF175 PYGO2 ZNF644 RELA ZNF766 L3MBTL2 CAVIN1 ZNF740 NR4A1 E2F5 STEAP1B LOC541472 IL6 LOC401312 GC07P022719
GH07G022671 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.2 -7197 3.2 FOXA2 NFIB SIN3A RARA GATA2 FOS RCOR1 CEBPB NFYC MIER2 STEAP1B IL6 LOC541472 ENSG00000226329 LOC401312 GC07P022719
GH07G022675 1.4 Ensembl ENCODE dbSUPER 0.4 -11.0 -11023 3.0 HDAC1 TBL1XR1 NFRKB FEZF1 ZNF121 GATA2 EGR1 FOS JUNB ELF1 LOC541472 STEAP1B IL6 ENSG00000226329 LOC401312 GC07P022719
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC401312 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC401312 Gene

Chromosome:
7
Start:
22,649,960 bp from pter
End:
22,665,533 bp from pter
Size:
15,574 bases
Orientation:
Minus strand

Genomic View for LOC401312 Gene

Genes around LOC401312 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC401312 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC401312 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC401312 Gene

Proteins for LOC401312 Gene

  • Protein details for LOC401312 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A4D149
    Recommended name:
    Hypothetical gene supported by BC039682
    Protein Accession:
    A4D149

    Protein attributes for LOC401312 Gene

    Size:
    119 amino acids
    Molecular mass:
    13328 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC401312 Gene

Post-translational modifications for LOC401312 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC401312 Gene

Domains & Families for LOC401312 Gene

Protein Domains for LOC401312 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LOC401312 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC401312: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC401312 Gene

Function for LOC401312 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC401312 Gene

Localization for LOC401312 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC401312 Gene

Pathways & Interactions for LOC401312 Gene

SuperPathways for LOC401312 Gene

No Data Available

Interacting Proteins for LOC401312 Gene

Gene Ontology (GO) - Biological Process for LOC401312 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC401312 Gene

Transcripts for LOC401312 Gene

mRNA/cDNA for LOC401312 Gene

(6) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC401312 Gene

Uncharacterized LOC401312:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC401312 Gene

No ASD Table

Relevant External Links for LOC401312 Gene

GeneLoc Exon Structure for
LOC401312

Expression for LOC401312 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC401312 Gene

SOURCE GeneReport for Unigene cluster for LOC401312 Gene:

Hs.583393
genes like me logo Genes that share expression patterns with LOC401312: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC401312 Gene

Orthologs for LOC401312 Gene

Evolution for LOC401312 Gene

ENSEMBL:
Gene Tree for LOC401312 (if available)
TreeFam:
Gene Tree for LOC401312 (if available)

No data available for Orthologs for LOC401312 Gene

Paralogs for LOC401312 Gene

No data available for Paralogs for LOC401312 Gene

Variants for LOC401312 Gene

Sequence variations from dbSNP and Humsavar for LOC401312 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000155742 -- 22,651,053(+) TGAGG(A/G)AACCC nc-transcript-variant
rs1000170114 -- 22,664,789(+) CCTCA(A/C)TGTAG intron-variant
rs1000817390 -- 22,653,833(+) CAAAG(A/C)CTTTG intron-variant
rs1000830981 -- 22,667,212(+) TCAAC(G/T)GCTAA upstream-variant-2KB
rs1000857629 -- 22,660,972(+) TGGTG(A/G)CTAAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC401312 Gene

Variant ID Type Subtype PubMed ID
nsv527614 CNV loss 19592680
nsv7393 OTHER inversion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC401312 Gene

Disorders for LOC401312 Gene

Relevant External Links for LOC401312

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC401312

No disorders were found for LOC401312 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC401312 Gene

Publications for LOC401312 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC401312 Gene

Sources for LOC401312 Gene

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