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Aliases for LOC400748 Gene

Aliases for LOC400748 Gene

  • Uncharacterized LOC400748 3
  • RP1-65J11.5 5

External Ids for LOC400748 Gene

Previous GeneCards Identifiers for LOC400748 Gene

  • GC01P030826
  • GC01P030958
  • GC01U901375
  • GC01P031332

Summaries for LOC400748 Gene

GeneCards Summary for LOC400748 Gene

LOC400748 (Uncharacterized LOC400748) is an Uncategorized gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC400748 Gene

Genomics for LOC400748 Gene

Regulatory Elements for LOC400748 Gene

Enhancers for LOC400748 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G030808 1.5 Ensembl ENCODE dbSUPER 11.8 -48.5 -48511 3.2 HDGF PKNOX1 ATF1 CREB3L1 SIN3A FEZF1 GATA2 FOS ZNF263 PAF1 SDC3 LOC400748 MATN1 MATN1-AS1 GC01P030805 ENSG00000229607
GH01G030801 1.5 Ensembl ENCODE dbSUPER 11.5 -56.2 -56248 0.9 ATF1 CREB3L1 GLIS2 CBX5 ZNF143 YY2 TSHZ1 REST ZNF662 ZNF623 SNRNP40 LOC105378626 SDC3 LAPTM5 LOC400748 MATN1 MATN1-AS1 ADGRB2 ENSG00000229447 GC01P030805
GH01G030823 1.4 ENCODE dbSUPER 12.2 -34.0 -33981 2.3 CREB3L1 ZFP64 DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC MEF2D SDC3 SNRNP40 LOC400748 MATN1 MATN1-AS1 ENSG00000235790 LINC01778 RN7SKP91
GH01G030797 1.3 Ensembl ENCODE dbSUPER 11.6 -59.7 -59736 2.6 BCOR CTCF ATF1 JUN ZMYM3 RAD21 ZIC2 ZKSCAN1 FOSL1 ZNF366 SDC3 MATN1 LOC400748 MATN1-AS1 GC01P030805 LOC105378621
GH01G030912 1.3 Ensembl ENCODE 11.5 +55.1 55138 1.4 HDGF ZNF133 ZNF493 GLI4 ZNF2 GLIS2 KLF7 ZNF548 SP3 YY2 SNRNP40 ENSG00000229447 ENSG00000235790 LOC400748 MATN1 MATN1-AS1 SDC3 RN7SL371P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC400748 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC400748 Gene

Chromosome:
1
Start:
30,858,158 bp from pter
End:
30,860,254 bp from pter
Size:
2,097 bases
Orientation:
Plus strand

Genomic View for LOC400748 Gene

Genes around LOC400748 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC400748 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400748 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400748 Gene

Proteins for LOC400748 Gene

Post-translational modifications for LOC400748 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400748 Gene

Domains & Families for LOC400748 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC400748 Gene

Function for LOC400748 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400748 Gene

Localization for LOC400748 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC400748 Gene

Pathways & Interactions for LOC400748 Gene

SuperPathways for LOC400748 Gene

No Data Available

Interacting Proteins for LOC400748 Gene

Gene Ontology (GO) - Biological Process for LOC400748 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC400748 Gene

Drugs & Compounds for LOC400748 Gene

No Compound Related Data Available

Transcripts for LOC400748 Gene

mRNA/cDNA for LOC400748 Gene

(1) Additional mRNA sequences :
(9) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC400748 Gene

Uncharacterized LOC400748:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400748 Gene

No ASD Table

Relevant External Links for LOC400748 Gene

GeneLoc Exon Structure for
LOC400748

Expression for LOC400748 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC400748 Gene

mRNA differential expression in normal tissues according to GTEx for LOC400748 Gene

This gene is overexpressed in Testis (x47.5).

SOURCE GeneReport for Unigene cluster for LOC400748 Gene:

Hs.639254
genes like me logo Genes that share expression patterns with LOC400748: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC400748 Gene

Orthologs for LOC400748 Gene

Evolution for LOC400748 Gene

ENSEMBL:
Gene Tree for LOC400748 (if available)
TreeFam:
Gene Tree for LOC400748 (if available)

No data available for Orthologs for LOC400748 Gene

Paralogs for LOC400748 Gene

No data available for Paralogs for LOC400748 Gene

Variants for LOC400748 Gene

Sequence variations from dbSNP and Humsavar for LOC400748 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000240749 -- 30,862,221(+) GGCAA(C/T)TGAGT intron-variant
rs1000357192 -- 30,862,427(+) GGAGG(C/T)ATCCA downstream-variant-500B
rs1000598459 -- 30,858,207(+) TGTGC(A/C)CCCGC nc-transcript-variant
rs1000826133 -- 30,857,512(+) AGTGG(C/T)GCAAT upstream-variant-2KB
rs1001543571 -- 30,860,790(+) AGGCA(C/T)ACAGC nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC400748 Gene

Disorders for LOC400748 Gene

Relevant External Links for LOC400748

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC400748

No disorders were found for LOC400748 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC400748 Gene

Publications for LOC400748 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC400748 Gene

Sources for LOC400748 Gene

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