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Aliases for LOC400710 Gene

Subcategory (RNA class) for LOC400710 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC400710 Gene

  • Uncharacterized LOC400710 3
  • FLJ26850 Protein 5
  • FLJ26850 5

External Ids for LOC400710 Gene

Summaries for LOC400710 Gene

GeneCards Summary for LOC400710 Gene

LOC400710 (Uncharacterized LOC400710) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC400710 Gene

Genomics for LOC400710 Gene

Regulatory Elements for LOC400710 Gene

Enhancers for LOC400710 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around LOC400710 on UCSC Golden Path with GeneCards custom track

Promoters for LOC400710 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LOC400710 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC400710 Gene

Chromosome:
19
Start:
50,050,589 bp from pter
End:
50,066,795 bp from pter
Size:
16,207 bases
Orientation:
Plus strand

Genomic View for LOC400710 Gene

Genes around LOC400710 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC400710 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC400710 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC400710 Gene

Proteins for LOC400710 Gene

Post-translational modifications for LOC400710 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC400710 Gene

Domains & Families for LOC400710 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC400710 Gene

Function for LOC400710 Gene

Phenotypes for LOC400710 Gene

GenomeRNAi human phenotypes for LOC400710:
genes like me logo Genes that share phenotypes with LOC400710: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC400710 Gene

Localization for LOC400710 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC400710 Gene

Pathways & Interactions for LOC400710 Gene

SuperPathways for LOC400710 Gene

No Data Available

Interacting Proteins for LOC400710 Gene

Gene Ontology (GO) - Biological Process for LOC400710 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC400710 Gene

Drugs & Compounds for LOC400710 Gene

No Compound Related Data Available

Transcripts for LOC400710 Gene

mRNA/cDNA for LOC400710 Gene

(4) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC400710 Gene

FLJ26850 protein:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC400710 Gene

No ASD Table

Relevant External Links for LOC400710 Gene

GeneLoc Exon Structure for
LOC400710

Expression for LOC400710 Gene

SOURCE GeneReport for Unigene cluster for LOC400710 Gene:

Hs.628968
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LOC400710 Gene

Orthologs for LOC400710 Gene

Evolution for LOC400710 Gene

ENSEMBL:
Gene Tree for LOC400710 (if available)
TreeFam:
Gene Tree for LOC400710 (if available)

No data available for Orthologs for LOC400710 Gene

Paralogs for LOC400710 Gene

No data available for Paralogs for LOC400710 Gene

Variants for LOC400710 Gene

Sequence variations from dbSNP and Humsavar for LOC400710 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs3097342 -- 50,051,686(+) GCCCC(A/G)GGACA intron-variant
rs3097343 -- 50,057,718(+) AAAAA(A/T)AAATA intron-variant
rs3745496 -- 50,053,331(+) CTTAA(A/G)CACCT intron-variant
rs10426287 -- 50,055,530(+) cgtct(C/T)tacta intron-variant
rs10542117 -- 50,051,993(+) AATTC(-/TTTTTTTTT)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC400710 Gene

Variant ID Type Subtype PubMed ID
dgv3622n100 CNV gain 25217958
dgv654e199 CNV deletion 23128226
esv24005 CNV loss 19812545
esv2527889 CNV loss 19546169
esv2571711 CNV deletion 19546169
esv2751796 CNV gain 17911159
esv2758766 CNV loss 17122850
esv33440 CNV loss 17666407
esv3644638 CNV loss 21293372
esv3644639 CNV gain 21293372
nsv1059007 CNV gain 25217958
nsv1065753 CNV gain 25217958
nsv1067191 CNV gain 25217958
nsv1140251 OTHER inversion 24896259
nsv2523 CNV insertion 18451855
nsv428369 CNV loss 18775914
nsv458722 CNV gain 19166990
nsv458723 CNV loss 19166990
nsv469748 CNV gain+loss 16826518
nsv579912 CNV gain 21841781
nsv579913 CNV gain 21841781
nsv579914 CNV loss 21841781
nsv963064 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC400710 Gene

Disorders for LOC400710 Gene

No disorders were found for LOC400710 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC400710 Gene

Publications for LOC400710 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 65

Products for LOC400710 Gene

Sources for LOC400710 Gene

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