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Aliases for LOC399716 Gene

Aliases for LOC399716 Gene

  • Uncharacterized LOC399716 3
  • Uncharacterized Protein DKFZp667F0711 3
  • DKFZp667F0711 3
  • RP11-563J2.3 5

External Ids for LOC399716 Gene

Summaries for LOC399716 Gene

GeneCards Summary for LOC399716 Gene

LOC399716 (Uncharacterized LOC399716) is an Uncategorized gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC399716 Gene

Genomics for LOC399716 Gene

Regulatory Elements for LOC399716 Gene

Promoters for LOC399716 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LOC399716 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC399716 Gene

Chromosome:
10
Start:
6,347,183 bp from pter
End:
6,352,762 bp from pter
Size:
5,580 bases
Orientation:
Plus strand

Genomic View for LOC399716 Gene

Genes around LOC399716 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC399716 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC399716 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC399716 Gene

Proteins for LOC399716 Gene

Post-translational modifications for LOC399716 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC399716 Gene

Domains & Families for LOC399716 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC399716 Gene

Function for LOC399716 Gene

Phenotypes for LOC399716 Gene

GenomeRNAi human phenotypes for LOC399716:
genes like me logo Genes that share phenotypes with LOC399716: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC399716 Gene

Localization for LOC399716 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC399716 Gene

Pathways & Interactions for LOC399716 Gene

SuperPathways for LOC399716 Gene

No Data Available

Interacting Proteins for LOC399716 Gene

Gene Ontology (GO) - Biological Process for LOC399716 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC399716 Gene

Drugs & Compounds for LOC399716 Gene

No Compound Related Data Available

Transcripts for LOC399716 Gene

mRNA/cDNA for LOC399716 Gene

(7) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC399716 Gene

No ASD Table

Relevant External Links for LOC399716 Gene

GeneLoc Exon Structure for
LOC399716

Expression for LOC399716 Gene

mRNA expression in normal human tissues for LOC399716 Gene

genes like me logo Genes that share expression patterns with LOC399716: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LOC399716 Gene

Orthologs for LOC399716 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC399716 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 97 (a)
OneToOne
Species with no ortholog for LOC399716:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC399716 Gene

ENSEMBL:
Gene Tree for LOC399716 (if available)
TreeFam:
Gene Tree for LOC399716 (if available)

Paralogs for LOC399716 Gene

No data available for Paralogs for LOC399716 Gene

Variants for LOC399716 Gene

Sequence variations from dbSNP and Humsavar for LOC399716 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs947471 -- 6,347,710(+) CATCA(C/T)TTCAG nc-transcript-variant
rs947472 -- 6,347,858(+) TGCCG(C/T)GCCCC nc-transcript-variant
rs947473 -- 6,347,952(+) GCAGC(A/C)TCTCC nc-transcript-variant
rs947474 -- 6,348,488(+) CTCTC(A/G)GAATG nc-transcript-variant
rs725206 -- 6,353,033(+) GCTGC(C/T)GTTAA downstream-variant-500B

Relevant External Links for LOC399716 Gene

HapMap Linkage Disequilibrium report
LOC399716

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LOC399716 Gene

Disorders for LOC399716 Gene

No disorders were found for LOC399716 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC399716 Gene

Publications for LOC399716 Gene

  1. Genetics of rheumatoid arthritis contributes to biology and drug discovery. (PMID: 24390342) Okada Y. … Plenge R.M. (Nature 2013) 3 67
  2. Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. (PMID: 20453842) Stahl E.A. … Plenge R.M. (Nat. Genet. 2010) 3
  3. Common variants at CD40 and other loci confer risk of rheumatoid arthritis. (PMID: 18794853) Raychaudhuri S. … Plenge R.M. (Nat. Genet. 2008) 3
  4. Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci. (PMID: 18978792) Cooper J.D. … Todd J.A. (Nat. Genet. 2008) 3

Products for LOC399716 Gene

Sources for LOC399716 Gene

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