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Aliases for LOC399716 Gene

Quality Score for this RNA gene is

2

Aliases for LOC399716 Gene

  • Uncharacterized LOC399716 3
  • Uncharacterized Protein DKFZp667F0711 3
  • DKFZp667F0711 3

External Ids for LOC399716 Gene

Summaries for LOC399716 Gene

GeneCards Summary for LOC399716 Gene

LOC399716 (Uncharacterized LOC399716) is an RNA Gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC399716 Gene

Genomics for LOC399716 Gene

Genomic Location for LOC399716 Gene

Start:
6,349,589 bp from pter
End:
6,352,762 bp from pter
Size:
3,174 bases
Orientation:
Plus strand

Genomic View for LOC399716 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LOC399716 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC399716 Gene

No data available for Regulatory Elements for LOC399716 Gene

Proteins for LOC399716 Gene

Post-translational modifications for LOC399716 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC399716 Gene

Domains for LOC399716 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC399716 Gene

Function for LOC399716 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LOC399716 Gene

Localization for LOC399716 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC399716 Gene

Pathways for LOC399716 Gene

SuperPathways for LOC399716 Gene

No Data Available

Interacting Proteins for LOC399716 Gene

Gene Ontology (GO) - Biological Process for LOC399716 Gene

None

No data available for Pathways by source for LOC399716 Gene

Transcripts for LOC399716 Gene

mRNA/cDNA for LOC399716 Gene

(7) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LOC399716
    • Block miRNA regulation of LOC399716 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for LOC399716

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for LOC399716 Gene

    No ASD Table

    Relevant External Links for LOC399716 Gene

    GeneLoc Exon Structure for
    LOC399716

    Expression for LOC399716 Gene

    mRNA expression in normal human tissues for LOC399716 Gene

    genes like me logo Genes that share expressions with LOC399716: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for LOC399716 Gene

    Orthologs for LOC399716 Gene

    This gene was present in the common ancestor of human and chimp.

    Orthologs for LOC399716 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia -- 36
    • 97 (a)
    OneToOne
    Species with no ortholog for LOC399716:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • cow (Bos Taurus)
    • dog (Canis familiaris)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • mouse (Mus musculus)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for LOC399716 Gene

    ENSEMBL:
    Gene Tree for LOC399716 (if available)
    TreeFam:
    Gene Tree for LOC399716 (if available)

    Paralogs for LOC399716 Gene

    No data available for Paralogs for LOC399716 Gene

    Variants for LOC399716 Gene

    Sequence variations from dbSNP and Humsavar for LOC399716 Gene

    SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
    rs725206 -- 6,353,033(+) GCTGC(C/T)GTTAA downstream-variant-500B
    rs725207 -- 6,353,191(+) AGACA(C/G)CATCA downstream-variant-500B
    rs744253 -- 6,351,047(-) GTGTT(C/T)CAGTC nc-transcript-variant
    rs744254 -- 6,350,886(-) CCAAT(C/T)TGGTT nc-transcript-variant
    rs947470 -- 6,347,643(+) AACGG(A/G)AGCCT upstream-variant-2KB

    Relevant External Links for LOC399716 Gene

    HapMap Linkage Disequilibrium report
    LOC399716

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for LOC399716 Gene

    Disorders for LOC399716 Gene

    No disorders were found for LOC399716 Gene.

    No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for LOC399716 Gene

    Publications for LOC399716 Gene

    1. Common variants at CD40 and other loci confer risk of rheumatoid arthritis. (PMID: 18794853) Raychaudhuri S. … Plenge R.M. (Nat. Genet. 2008) 3
    2. Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci. (PMID: 18978792) Cooper J.D. … Todd J.A. (Nat. Genet. 2008) 3
    3. Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. (PMID: 20453842) Stahl E.A. … Plenge R.M. (Nat. Genet. 2010) 3
    4. Genetics of rheumatoid arthritis contributes to biology and drug discovery. (PMID: 24390342) Okada Y. … Plenge R.M. (Nature 2013) 3

    Products for LOC399716 Gene

    Sources for LOC399716 Gene

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