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Aliases for LOC399716 Gene

Aliases for LOC399716 Gene

  • Uncharacterized LOC399716 3
  • DKFZp667F0711 3
  • RP11-563J2.3 5

External Ids for LOC399716 Gene

Summaries for LOC399716 Gene

GeneCards Summary for LOC399716 Gene

LOC399716 (Uncharacterized LOC399716) is an Uncategorized gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC399716 Gene

Genomics for LOC399716 Gene

Regulatory Elements for LOC399716 Gene

Enhancers for LOC399716 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G006231 1 dbSUPER 9.1 -114.2 -114242 3.5 HDGF PKNOX1 SIN3A YY1 ZNF143 FOS KDM4B JUNB ZNF518A NFIL3 LOC399715 LOC399716 PIR37204 PIR51201
GH10G006238 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4.7 -107.7 -107748 1.6 ATF1 SIN3A ZBTB7B TCF12 ZNF766 GATA2 FOS JUNB REST SREBF1 PFKFB3 LOC399716 IL15RA GC10M006245 PIR37204 ENSG00000238366
GH10G006327 0.8 Ensembl ENCODE 7.1 -18.4 -18438 1.6 EED IKZF1 CEBPB IKZF2 ATF2 ZBTB40 LOC399716 DPPA5P3 GC10P006325
GH10G006221 0.8 ENCODE dbSUPER 4.9 -124.7 -124741 2.7 HDGF POLR2A BHLHE40 TARDBP REST LOC399716 PIR51201 PIR37204
GH10G006241 0.4 ENCODE 4.7 -105.2 -105238 1.3 SREBF1 ZBTB11 LOC399716 ENSG00000238366 GC10M006245 PIR37204
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC399716 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC399716 Gene

Chromosome:
10
Start:
6,347,183 bp from pter
End:
6,352,762 bp from pter
Size:
5,580 bases
Orientation:
Plus strand

Genomic View for LOC399716 Gene

Genes around LOC399716 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC399716 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC399716 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC399716 Gene

Proteins for LOC399716 Gene

Post-translational modifications for LOC399716 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC399716 Gene

Domains & Families for LOC399716 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC399716 Gene

Function for LOC399716 Gene

Phenotypes for LOC399716 Gene

GenomeRNAi human phenotypes for LOC399716:
genes like me logo Genes that share phenotypes with LOC399716: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC399716 Gene

Localization for LOC399716 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC399716 Gene

Pathways & Interactions for LOC399716 Gene

SuperPathways for LOC399716 Gene

No Data Available

Interacting Proteins for LOC399716 Gene

Gene Ontology (GO) - Biological Process for LOC399716 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC399716 Gene

Drugs & Compounds for LOC399716 Gene

No Compound Related Data Available

Transcripts for LOC399716 Gene

mRNA/cDNA for LOC399716 Gene

(7) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC399716 Gene

No ASD Table

Relevant External Links for LOC399716 Gene

GeneLoc Exon Structure for
LOC399716

Expression for LOC399716 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC399716 Gene

genes like me logo Genes that share expression patterns with LOC399716: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC399716 Gene

Orthologs for LOC399716 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC399716 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 97 (a)
OneToOne
Species where no ortholog for LOC399716 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC399716 Gene

ENSEMBL:
Gene Tree for LOC399716 (if available)
TreeFam:
Gene Tree for LOC399716 (if available)

Paralogs for LOC399716 Gene

No data available for Paralogs for LOC399716 Gene

Variants for LOC399716 Gene

Sequence variations from dbSNP and Humsavar for LOC399716 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000393764 -- 6,353,115(+) AAGCT(A/G)TGATT downstream-variant-500B
rs1000425912 -- 6,347,693(+) CTGTG(A/G)AATGG nc-transcript-variant
rs1000558598 -- 6,346,764(+) TCAGG(A/G)GGCAG nc-transcript-variant
rs1000776631 -- 6,351,724(+) AGCTG(-/GCT)GGAGT nc-transcript-variant
rs1001120833 -- 6,352,063(+) GGGCT(C/T)AGACT nc-transcript-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC399716 Gene

Disorders for LOC399716 Gene

Relevant External Links for LOC399716

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC399716

No disorders were found for LOC399716 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC399716 Gene

Publications for LOC399716 Gene

  1. Genetics of rheumatoid arthritis contributes to biology and drug discovery. (PMID: 24390342) Okada Y. … Plenge R.M. (Nature 2013) 3 64
  2. Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. (PMID: 20453842) Stahl E.A. … Plenge R.M. (Nat. Genet. 2010) 3 64
  3. Common variants at CD40 and other loci confer risk of rheumatoid arthritis. (PMID: 18794853) Raychaudhuri S. … Plenge R.M. (Nat. Genet. 2008) 3 64
  4. Meta-analysis of genome-wide association study data identifies additional type 1 diabetes risk loci. (PMID: 18978792) Cooper J.D. … Todd J.A. (Nat. Genet. 2008) 3 64

Products for LOC399716 Gene

Sources for LOC399716 Gene

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