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Aliases for LOC392787 Gene

Aliases for LOC392787 Gene

  • Filamin C Pseudogene 3
  • RP11-309L24.6 5

External Ids for LOC392787 Gene

Previous GeneCards Identifiers for LOC392787 Gene

  • GC07U900305
  • GC07Mh27566
  • GC07Mh28146
  • GC07M128146
  • GC07M128339
  • GC07M128553

Summaries for LOC392787 Gene

GeneCards Summary for LOC392787 Gene

LOC392787 (Filamin C Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC392787 Gene

Genomics for LOC392787 Gene

Regulatory Elements for LOC392787 Gene

Enhancers for LOC392787 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G128826 1.8 FANTOM5 ENCODE dbSUPER 8.8 +90.6 90636 11.9 CREB3L1 AGO1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 MEF2D RBM28 ENSG00000242588 CCDC136 LOC392787 ATP6V1F CALU FLNC FLNC-AS1
GH07G128858 1.5 Ensembl ENCODE dbSUPER 8.7 +63.0 63033 3.0 HNRNPUL1 HDGF PKNOX1 ATF1 ARNT SIN3A YBX1 TCF12 ZNF766 CBX5 CCDC136 OPN1SW FLNC IMP3P2 FAM71F2 ENSG00000241493 LOC392787 ENSG00000271553 FLNC-AS1
GH07G128892 0.7 ENCODE 9.7 +29.9 29891 1.4 SMARCE1 ESRRA L3MBTL2 NFRKB NR2F1 CHD1 MNT YY1 POLR2A IKZF1 FLNC-AS1 ATP6V1F FLNC TSPAN33 OPN1SW AHCYL2 ENSG00000243230 IMP3P2 ENSG00000241493 FAM71F2
GH07G128868 1.2 Ensembl ENCODE 5.4 +53.4 53391 2.4 PTBP1 NFIB AGO1 KLF17 RAD21 ZEB1 GLIS2 ZNF366 ZNF143 EGR2 LOC100130705 ENSG00000230715 LOC392787 METTL2B GC07P128870 GC07P128872
GH07G128936 1.2 ENCODE dbSUPER 5.3 -16.5 -16516 5.5 HDGF PKNOX1 WRNIP1 ARID4B SIN3A GLIS2 ELK1 ZNF143 ZNF207 KLF7 IRF5 KCP ENSG00000242162 FLNC FLNC-AS1 ATP6V1F TNPO3 TPI1P2 TSPAN33 ENSG00000271553
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC392787 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC392787 Gene

Chromosome:
7
Start:
128,912,660 bp from pter
End:
128,923,070 bp from pter
Size:
10,411 bases
Orientation:
Minus strand

Genomic View for LOC392787 Gene

Genes around LOC392787 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC392787 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC392787 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC392787 Gene

Proteins for LOC392787 Gene

  • Protein details for LOC392787 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A4D1J9
    Recommended name:
    Similar to Filamin C (Gamma-filamin) (Filamin 2) (Protein FLNc) (Actin-binding like protein) (ABP-L) (ABP-280-like protein)
    Protein Accession:
    A4D1J9

    Protein attributes for LOC392787 Gene

    Size:
    306 amino acids
    Molecular mass:
    32808 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC392787 Gene

Post-translational modifications for LOC392787 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC392787 Gene

Domains & Families for LOC392787 Gene

Protein Domains for LOC392787 Gene

Suggested Antigen Peptide Sequences for LOC392787 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC392787: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC392787 Gene

Function for LOC392787 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC392787 Gene

Localization for LOC392787 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC392787 Gene

Pathways & Interactions for LOC392787 Gene

SuperPathways for LOC392787 Gene

No Data Available

Interacting Proteins for LOC392787 Gene

Gene Ontology (GO) - Biological Process for LOC392787 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC392787 Gene

Drugs & Compounds for LOC392787 Gene

No Compound Related Data Available

Transcripts for LOC392787 Gene

mRNA/cDNA for LOC392787 Gene

(3) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC392787 Gene

No ASD Table

Relevant External Links for LOC392787 Gene

GeneLoc Exon Structure for
LOC392787

Expression for LOC392787 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC392787 Gene

mRNA differential expression in normal tissues according to GTEx for LOC392787 Gene

This gene is overexpressed in Heart - Left Ventricle (x30.8) and Muscle - Skeletal (x14.5).

Protein differential expression in normal tissues from HIPED for LOC392787 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MOPED for LOC392787 Gene



Protein tissue co-expression partners for LOC392787 Gene

genes like me logo Genes that share expression patterns with LOC392787: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC392787 Gene

Orthologs for LOC392787 Gene

Evolution for LOC392787 Gene

ENSEMBL:
Gene Tree for LOC392787 (if available)
TreeFam:
Gene Tree for LOC392787 (if available)

No data available for Orthologs for LOC392787 Gene

Paralogs for LOC392787 Gene

(2) SIMAP similar genes for LOC392787 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with LOC392787: view

No data available for Paralogs for LOC392787 Gene

Variants for LOC392787 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC392787 Gene

Disorders for LOC392787 Gene

No disorders were found for LOC392787 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC392787 Gene

Publications for LOC392787 Gene

  1. DNA sequencing errors in molecular diagnostics of filamin myopathy. (PMID: 20578970) Odgerel Z. … Goldfarb L.G. (Clin. Chem. Lab. Med. 2010) 3 64
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 64

Products for LOC392787 Gene

Sources for LOC392787 Gene

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