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Aliases for LOC390937 Gene

Aliases for LOC390937 Gene

  • Ets2 Repressor Factor-Like 3
  • CTD-2575K13.6 5

External Ids for LOC390937 Gene

Previous GeneCards Identifiers for LOC390937 Gene

  • GC19U900332
  • GC19M047104
  • GC19M042412

Summaries for LOC390937 Gene

GeneCards Summary for LOC390937 Gene

LOC390937 (Ets2 Repressor Factor-Like) is a Protein Coding gene. An important paralog of this gene is ERF.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC390937 Gene

Genomics for LOC390937 Gene

Regulatory Elements for LOC390937 Gene

Enhancers for LOC390937 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G041882 1.4 ENCODE dbSUPER 6.1 +41.9 41858 9.2 MLX CREB3L1 FEZF1 DMAP1 YBX1 YY1 ZNF143 ZNF548 ZNF263 MCM3 RABAC1 MEGF8 ZNF526 RPS19 TMEM145 LOC390937 ARHGEF1 PCAT19 PLEKHA3P1
GH19G041893 1.1 ENCODE dbSUPER 6.2 +33.9 33857 1.4 HDGF ZSCAN4 ARID4B KLF17 RAD21 RARA ZNF366 KLF7 MCM3 CEBPB RPS19 LOC390937 PCAT19 PLEKHA3P1 ARHGEF1
GH19G041891 1.1 dbSUPER 6.1 +36.0 36031 2.2 HDGF PKNOX1 CREB3L1 SIN3A ZNF2 ZNF143 ZNF207 FOS ZNF263 SP3 RPS19 ZNF526 LOC732229 LOC390937 PLEKHA3P1 ARHGEF1
GH19G041903 1 ENCODE 6.3 +24.2 24201 2.3 FOXA2 MLX AGO1 ARID4B SIN3A ZNF48 YY1 ZNF263 SP5 ZHX2 LOC390937 ARHGEF1
GH19G041924 0.7 FANTOM5 0.7 +3.2 3204 0.7 RNF2 L3MBTL2 SUZ12 MNT ZEB2 ZNF311 ATF2 ZEB1 ZNF121 TFDP1 MEGF8 ARHGEF1 DEDD2 LOC390937
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC390937 on UCSC Golden Path with GeneCards custom track

Promoters for LOC390937 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000109727 -84 401 ATF1 RB1 CREB3L1 NFXL1 ZNF48 ZNF766 EGR1 ZNF143 ETV6 CREM

Genomic Location for LOC390937 Gene

Chromosome:
19
Start:
41,907,535 bp from pter
End:
41,928,516 bp from pter
Size:
20,982 bases
Orientation:
Minus strand

Genomic View for LOC390937 Gene

Genes around LOC390937 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC390937 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC390937 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC390937 Gene

Proteins for LOC390937 Gene

Post-translational modifications for LOC390937 Gene

No Post-translational modifications

Other Protein References for LOC390937 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for LOC390937 Gene

Domains & Families for LOC390937 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC390937 Gene

Function for LOC390937 Gene

Phenotypes for LOC390937 Gene

GenomeRNAi human phenotypes for LOC390937:
genes like me logo Genes that share phenotypes with LOC390937: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC390937 Gene

Localization for LOC390937 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC390937 Gene

Pathways & Interactions for LOC390937 Gene

SuperPathways for LOC390937 Gene

No Data Available

Interacting Proteins for LOC390937 Gene

Gene Ontology (GO) - Biological Process for LOC390937 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC390937 Gene

Drugs & Compounds for LOC390937 Gene

No Compound Related Data Available

Transcripts for LOC390937 Gene

mRNA/cDNA for LOC390937 Gene

(2) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC390937 Gene

No ASD Table

Relevant External Links for LOC390937 Gene

GeneLoc Exon Structure for
LOC390937

Expression for LOC390937 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC390937 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for LOC390937 Gene

This gene is overexpressed in Spleen (x5.1), Whole Blood (x4.6), and Small Intestine - Terminal Ileum (x4.4).
genes like me logo Genes that share expression patterns with LOC390937: view

No data available for Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC390937 Gene

Orthologs for LOC390937 Gene

This gene was present in the common ancestor of chordates.

Orthologs for LOC390937 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Gm4881 34 16
  • 89.49 (n)
rat
(Rattus norvegicus)
Mammalia RGD1563034 34
  • 89.05 (n)
cow
(Bos Taurus)
Mammalia LOC101907940 34
  • 88.79 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100485654 34
  • 64.34 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC558126 34
  • 68.71 (n)
Species where no ortholog for LOC390937 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LOC390937 Gene

ENSEMBL:
Gene Tree for LOC390937 (if available)
TreeFam:
Gene Tree for LOC390937 (if available)

Paralogs for LOC390937 Gene

Paralogs for LOC390937 Gene

genes like me logo Genes that share paralogs with LOC390937: view

Variants for LOC390937 Gene

Sequence variations from dbSNP and Humsavar for LOC390937 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000076635 -- 41,917,743(+) CCCAT(A/G)TAGGA intron-variant
rs1000236192 -- 41,926,648(+) CTGCC(A/G)GGCAG intron-variant
rs1000568600 -- 41,925,174(+) AGCCT(C/T)GGTAT intron-variant
rs1001115757 -- 41,919,329(+) ACACA(C/T)GCGCC intron-variant
rs1001188354 -- 41,927,692(+) ACATC(C/T)AAATC intron-variant, upstream-variant-2KB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC390937 Gene

Disorders for LOC390937 Gene

No disorders were found for LOC390937 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC390937 Gene

Publications for LOC390937 Gene

  1. Importin 8 is a gene silencing factor that targets argonaute proteins to distinct mRNAs. (PMID: 19167051) Weinmann L. … Meister G. (Cell 2009) 3 64

Products for LOC390937 Gene

Sources for LOC390937 Gene

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