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Aliases for LOC389906 Gene

Aliases for LOC389906 Gene

  • Zinc Finger Protein 839 Pseudogene 3
  • RP11-706O15.1 5

External Ids for LOC389906 Gene

Previous GeneCards Identifiers for LOC389906 Gene

  • GC0XU900384
  • GC0XP9O0046
  • GC0XM003745
  • GC0XM003749
  • GC0XM001683

Summaries for LOC389906 Gene

GeneCards Summary for LOC389906 Gene

LOC389906 (Zinc Finger Protein 839 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC389906 Gene

Genomics for LOC389906 Gene

Regulatory Elements for LOC389906 Gene


Promoters for LOC389906 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around LOC389906 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC389906 Gene

Chromosome:
X
Start:
3,817,528 bp from pter
End:
3,843,894 bp from pter
Size:
26,367 bases
Orientation:
Minus strand

Genomic View for LOC389906 Gene

Genes around LOC389906 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC389906 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC389906 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC389906 Gene

Proteins for LOC389906 Gene

  • Protein details for LOC389906 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q6PJD4
    Recommended name:
    LOC389906 protein
    Protein Accession:
    Q6PJD4

    Protein attributes for LOC389906 Gene

    Size:
    202 amino acids
    Molecular mass:
    21241 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC389906 Gene

Proteomics data for LOC389906 Gene at MOPED

Post-translational modifications for LOC389906 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC389906 Gene

Domains & Families for LOC389906 Gene

Protein Domains for LOC389906 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LOC389906 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC389906: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC389906 Gene

Function for LOC389906 Gene

genes like me logo Genes that share phenotypes with LOC389906: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC389906 Gene

Localization for LOC389906 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC389906 Gene

Pathways & Interactions for LOC389906 Gene

SuperPathways for LOC389906 Gene

No Data Available

Interacting Proteins for LOC389906 Gene

Gene Ontology (GO) - Biological Process for LOC389906 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC389906 Gene

Drugs & Compounds for LOC389906 Gene

No Compound Related Data Available

Transcripts for LOC389906 Gene

mRNA/cDNA for LOC389906 Gene

(10) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC389906 Gene

Zinc finger protein 839 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC389906 Gene

No ASD Table

Relevant External Links for LOC389906 Gene

GeneLoc Exon Structure for
LOC389906

Expression for LOC389906 Gene

mRNA expression in normal human tissues for LOC389906 Gene

SOURCE GeneReport for Unigene cluster for LOC389906 Gene Hs.636199

genes like me logo Genes that share expression patterns with LOC389906: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LOC389906 Gene

Orthologs for LOC389906 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC389906 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 94 (a)
OneToOne
Species with no ortholog for LOC389906:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC389906 Gene

ENSEMBL:
Gene Tree for LOC389906 (if available)
TreeFam:
Gene Tree for LOC389906 (if available)

Paralogs for LOC389906 Gene

(1) SIMAP similar genes for LOC389906 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for LOC389906 Gene

genes like me logo Genes that share paralogs with LOC389906: view

No data available for Paralogs for LOC389906 Gene

Variants for LOC389906 Gene

Sequence variations from dbSNP and Humsavar for LOC389906 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs747688629 -- 3,822,908(+) ACTGA(A/C)TGCGC intron-variant
rs747857533 -- 3,823,439(+) ATGAG(C/T)GGTAG intron-variant
rs747872739 -- 3,836,933(+) CTTTT(-/C)TTTTT intron-variant
rs748077728 -- 3,828,926(+) GGTCG(-/A)GATAC nc-transcript-variant
rs748083174 -- 3,817,855(+) TGTTG(-/A)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC389906 Gene

Variant ID Type Subtype PubMed ID
nsv820566 CNV Deletion 20802225
esv22025 CNV Gain+Loss 19812545

Variation tolerance for LOC389906 Gene

Gene Damage Index Score: 0.13; 3.04% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for LOC389906 Gene

Disorders for LOC389906 Gene

No disorders were found for LOC389906 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC389906 Gene

Publications for LOC389906 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 67

Products for LOC389906 Gene

Sources for LOC389906 Gene

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