Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC389906 Gene

Aliases for LOC389906 Gene

  • Zinc Finger Protein 839 Pseudogene 3

External Ids for LOC389906 Gene

Previous GeneCards Identifiers for LOC389906 Gene

  • GC0XU900384
  • GC0XP9O0046
  • GC0XM003745
  • GC0XM003749
  • GC0XM001683

Summaries for LOC389906 Gene

GeneCards Summary for LOC389906 Gene

LOC389906 (Zinc Finger Protein 839 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC389906 Gene

Genomics for LOC389906 Gene

Regulatory Elements for LOC389906 Gene

Genomic Location for LOC389906 Gene

Chromosome:
X
Start:
3,817,528 bp from pter
End:
3,843,894 bp from pter
Size:
26,367 bases
Orientation:
Minus strand

Genomic View for LOC389906 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for LOC389906 Gene

Proteins for LOC389906 Gene

  • Protein details for LOC389906 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q6PJD4
    Recommended name:
    LOC389906 protein
    Protein Accession:
    Q6PJD4

    Protein attributes for LOC389906 Gene

    Size:
    202 amino acids
    Molecular mass:
    21241 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC389906 Gene

Proteomics data for LOC389906 Gene at MOPED

Post-translational modifications for LOC389906 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC389906 Gene

Domains & Families for LOC389906 Gene

Protein Domains for LOC389906 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for LOC389906 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC389906: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC389906 Gene

Function for LOC389906 Gene

Phenotypes for LOC389906 Gene

GenomeRNAi human phenotypes for LOC389906:
genes like me logo Genes that share phenotypes with LOC389906: view

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LOC389906
    • Block miRNA regulation of LOC389906 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for LOC389906

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC389906 Gene

    Localization for LOC389906 Gene

    No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC389906 Gene

    Pathways & Interactions for LOC389906 Gene

    SuperPathways for LOC389906 Gene

    No Data Available

    Interacting Proteins for LOC389906 Gene

    Gene Ontology (GO) - Biological Process for LOC389906 Gene

    None

    No data available for Pathways by source and SIGNOR curated interactions for LOC389906 Gene

    Drugs & Compounds for LOC389906 Gene

    No Compound Related Data Available

    Transcripts for LOC389906 Gene

    mRNA/cDNA for LOC389906 Gene

    (10) Additional mRNA sequences :
    (7) Selected AceView cDNA sequences:
    (10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for LOC389906 Gene

    Zinc finger protein 839 pseudogene:
    Representative Sequences:

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate LOC389906
      • Block miRNA regulation of LOC389906 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for LOC389906

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for LOC389906 Gene

      No ASD Table

      Relevant External Links for LOC389906 Gene

      GeneLoc Exon Structure for
      LOC389906

      Expression for LOC389906 Gene

      mRNA expression in normal human tissues for LOC389906 Gene

      SOURCE GeneReport for Unigene cluster for LOC389906 Gene Hs.636199

      genes like me logo Genes that share expression patterns with LOC389906: view

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for LOC389906 Gene

      Orthologs for LOC389906 Gene

      This gene was present in the common ancestor of human and chimp.

      Orthologs for LOC389906 Gene

      Organism Taxonomy Gene Similarity Type Details
      chimpanzee
      (Pan troglodytes)
      Mammalia -- 36
      • 94 (a)
      OneToOne
      Species with no ortholog for LOC389906:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • cow (Bos Taurus)
      • dog (Canis familiaris)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • mouse (Mus musculus)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rat (Rattus norvegicus)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for LOC389906 Gene

      ENSEMBL:
      Gene Tree for LOC389906 (if available)
      TreeFam:
      Gene Tree for LOC389906 (if available)

      Paralogs for LOC389906 Gene

      (1) SIMAP similar genes for LOC389906 Gene using alignment to 1 proteins:

      Pseudogenes.org Pseudogenes for LOC389906 Gene

      genes like me logo Genes that share paralogs with LOC389906: view

      No data available for Paralogs for LOC389906 Gene

      Variants for LOC389906 Gene

      Sequence variations from dbSNP and Humsavar for LOC389906 Gene

      SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
      rs819540 -- 3,844,117(+) GGTCG(C/G)GGTGA upstream-variant-2KB
      rs1054501 -- 3,817,691(-) CATCT(C/T)AGACA nc-transcript-variant
      rs1054502 -- 3,817,608(-) AAGCT(C/T)ACCTG nc-transcript-variant
      rs1054504 -- 3,817,596(-) AATCA(C/T)GTGTC nc-transcript-variant
      rs1054506 -- 3,817,572(-) ACTGT(C/T)GAAGA nc-transcript-variant

      Structural Variations from Database of Genomic Variants (DGV) for LOC389906 Gene

      Variant ID Type Subtype PubMed ID
      nsv820566 CNV Deletion 20802225
      esv22025 CNV Gain+Loss 19812545

      Relevant External Links for LOC389906 Gene

      HapMap Linkage Disequilibrium report
      LOC389906

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LOC389906 Gene

      Disorders for LOC389906 Gene

      genes like me logo Genes that share disorders with LOC389906: view

      No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC389906 Gene

      Publications for LOC389906 Gene

      1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

      Products for LOC389906 Gene

      Sources for LOC389906 Gene

      Back to Top

      Content