Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LOC389906 Gene

Aliases for LOC389906 Gene

  • Zinc Finger Protein 839 Pseudogene 3
  • RP11-706O15.1 5

External Ids for LOC389906 Gene

Previous GeneCards Identifiers for LOC389906 Gene

  • GC0XU900384
  • GC0XP9O0046
  • GC0XM003745
  • GC0XM003749
  • GC0XM001683

Summaries for LOC389906 Gene

GeneCards Summary for LOC389906 Gene

LOC389906 (Zinc Finger Protein 839 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC389906 Gene

Genomics for LOC389906 Gene

Regulatory Elements for LOC389906 Gene

Enhancers for LOC389906 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG003813 1.8 FANTOM5 Ensembl ENCODE 6.6 +28.0 28038 4.5 HDGF PKNOX1 FOXA2 CREB3L1 AGO1 ARID4B SIN3A YY1 ZNF143 ZNF207 FAM239B PRKX LOC389906 GC0XP003806 GC0XM003863 TRI-GAT1-1
GH0XG003811 1.1 Ensembl ENCODE 5.6 +31.8 31754 0.5 CTCF PKNOX1 TBL1XR1 BACH1 ASH2L BMI1 RAD21 RELA ARID3A FOXK2 FAM239B LOC389906 GC0XP003806 GC0XM003863 TRI-GAT1-1
GH0XG003819 0.6 ENCODE 7.8 +23.5 23509 1.1 JUND BHLHE40 FOS NFE2 MAFK ATF2 FAM239B LOC389906 GC0XP003806 TRI-GAT1-1 GC0XM003863
GH0XG004181 0.5 ENCODE 4.5 -338.4 -338357 1.7 STAT1 TEAD4 RBBP5 FAM239B FAM239C LOC389906 PIR42712 RPL24P9
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC389906 on UCSC Golden Path with GeneCards custom track

Promoters for LOC389906 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000243987 594 2201 BHLHE40

Genomic Location for LOC389906 Gene

3,817,528 bp from pter
3,843,894 bp from pter
26,367 bases
Minus strand

Genomic View for LOC389906 Gene

Genes around LOC389906 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC389906 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC389906 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC389906 Gene

Proteins for LOC389906 Gene

  • Protein details for LOC389906 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    LOC389906 protein
    Protein Accession:

    Protein attributes for LOC389906 Gene

    202 amino acids
    Molecular mass:
    21241 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC389906 Gene

Post-translational modifications for LOC389906 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC389906 Gene

Domains & Families for LOC389906 Gene

Protein Domains for LOC389906 Gene


Suggested Antigen Peptide Sequences for LOC389906 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC389906: view

No data available for Gene Families and UniProtKB/Swiss-Prot for LOC389906 Gene

Function for LOC389906 Gene

genes like me logo Genes that share phenotypes with LOC389906: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC389906 Gene

Localization for LOC389906 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC389906 Gene

Pathways & Interactions for LOC389906 Gene

SuperPathways for LOC389906 Gene

No Data Available

Interacting Proteins for LOC389906 Gene

Gene Ontology (GO) - Biological Process for LOC389906 Gene


No data available for Pathways by source and SIGNOR curated interactions for LOC389906 Gene

Drugs & Compounds for LOC389906 Gene

No Compound Related Data Available

Transcripts for LOC389906 Gene

mRNA/cDNA for LOC389906 Gene

(1) REFSEQ mRNAs :
(10) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC389906 Gene

Zinc finger protein 839 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC389906 Gene

No ASD Table

Relevant External Links for LOC389906 Gene

GeneLoc Exon Structure for

Expression for LOC389906 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC389906 Gene

SOURCE GeneReport for Unigene cluster for LOC389906 Gene:

genes like me logo Genes that share expression patterns with LOC389906: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC389906 Gene

Orthologs for LOC389906 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC389906 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 35
  • 94 (a)
Species where no ortholog for LOC389906 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC389906 Gene

Gene Tree for LOC389906 (if available)
Gene Tree for LOC389906 (if available)

Paralogs for LOC389906 Gene

(1) SIMAP similar genes for LOC389906 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with LOC389906: view

No data available for Paralogs for LOC389906 Gene

Variants for LOC389906 Gene

Sequence variations from dbSNP and Humsavar for LOC389906 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1000295110 -- 3,821,715(+) CCACA(C/T)GTGAG intron-variant
rs1000410762 -- 3,821,360(+) CAAGG(C/T)GGGAG intron-variant
rs1001767761 -- 3,822,527(+) TGACA(A/G)TGCGT intron-variant
rs1002514179 -- 3,824,974(+) TGATA(C/T)ATCTG intron-variant
rs1002772164 -- 3,826,128(+) TCAGA(C/T)GTGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC389906 Gene

Variant ID Type Subtype PubMed ID
esv22025 CNV gain+loss 19812545
esv3573442 CNV loss 25503493
nsv1141045 CNV deletion 24896259
nsv820566 CNV deletion 20802225

Variation tolerance for LOC389906 Gene

Gene Damage Index Score: 0.13; 3.04% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for LOC389906 Gene

Disorders for LOC389906 Gene

Relevant External Links for LOC389906

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LOC389906 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC389906 Gene

Publications for LOC389906 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC389906 Gene

Sources for LOC389906 Gene

Loading form....