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Aliases for LOC388242 Gene

Aliases for LOC388242 Gene

  • Coiled-Coil Domain Containing 101 Pseudogene 3

External Ids for LOC388242 Gene

Previous GeneCards Identifiers for LOC388242 Gene

  • GC16U900278
  • GC16M029513
  • GC16M029383

Summaries for LOC388242 Gene

GeneCards Summary for LOC388242 Gene

LOC388242 (Coiled-Coil Domain Containing 101 Pseudogene) is a Pseudogene. An important paralog of this gene is LOC613038.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC388242 Gene

Genomics for LOC388242 Gene

Regulatory Elements for LOC388242 Gene

Genomic Location for LOC388242 Gene

29,464,967 bp from pter
29,467,833 bp from pter
2,867 bases
Minus strand

Genomic View for LOC388242 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LOC388242 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC388242 Gene

Proteins for LOC388242 Gene

  • Protein details for LOC388242 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    Secondary Accessions:

    Protein attributes for LOC388242 Gene

    439 amino acids
    Molecular mass:
    46538 Da
    Quaternary structure:
    No Data Available
  • Protein details for LOC388242 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    Secondary Accessions:

    Protein attributes for LOC388242 Gene

    143 amino acids
    Molecular mass:
    15616 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC388242 Gene

Proteomics data for LOC388242 Gene at MOPED

Post-translational modifications for LOC388242 Gene

No Post-translational modifications

Other Protein References for LOC388242 Gene

No data available for DME Specific Peptides for LOC388242 Gene

Domains for LOC388242 Gene

Protein Domains for LOC388242 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC388242: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC388242 Gene

Function for LOC388242 Gene

Phenotypes for LOC388242 Gene

GenomeRNAi human phenotypes for LOC388242:
genes like me logo Genes that share phenotypes with LOC388242: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LOC388242 Gene

Localization for LOC388242 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC388242 Gene

Pathways for LOC388242 Gene

SuperPathways for LOC388242 Gene

No Data Available

Interacting Proteins for LOC388242 Gene

Gene Ontology (GO) - Biological Process for LOC388242 Gene


No data available for Pathways by source for LOC388242 Gene

Transcripts for LOC388242 Gene

mRNA/cDNA for LOC388242 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC388242 Gene

Coiled-coil domain containing 101 pseudogene:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LOC388242
    • Block miRNA regulation of LOC388242 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for LOC388242

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for LOC388242 Gene

    No ASD Table

    Relevant External Links for LOC388242 Gene

    GeneLoc Exon Structure for

    Expression for LOC388242 Gene

    mRNA expression in normal human tissues for LOC388242 Gene

    SOURCE GeneReport for Unigene cluster for LOC388242 Gene Hs.662549

    genes like me logo Genes that share expressions with LOC388242: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for LOC388242 Gene

    Orthologs for LOC388242 Gene

    This gene was present in the common ancestor of animals.

    Orthologs for LOC388242 Gene

    Organism Taxonomy Gene Similarity Type Details
    (Bos Taurus)
    Mammalia -- 36
    • 60 (a)
    (Canis familiaris)
    Mammalia -- 36
    • 36 (a)
    (Monodelphis domestica)
    Mammalia -- 36
    • 40 (a)
    (Mus musculus)
    Mammalia Ccdc101 36
    • 40 (a)
    (Ornithorhynchus anatinus)
    Mammalia -- 36
    • 38 (a)
    (Pan troglodytes)
    Mammalia -- 36
    • 98 (a)
    (Gallus gallus)
    Aves CCDC101 36
    • 38 (a)
    (Anolis carolinensis)
    Reptilia -- 36
    • 39 (a)
    (Danio rerio)
    Actinopterygii ccdc101 36
    • 38 (a)
    fruit fly
    (Drosophila melanogaster)
    Insecta Sgf29 36
    • 23 (a)
    (Caenorhabditis elegans)
    Secernentea T22B7.4 36
    • 6 (a)
    Y17G9B.8 36
    • 14 (a)
    sea squirt
    (Ciona savignyi)
    Ascidiacea -- 36
    • 23 (a)
    Species with no ortholog for LOC388242:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • rainbow trout (Oncorhynchus mykiss)
    • rat (Rattus norvegicus)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)

    Evolution for LOC388242 Gene

    Gene Tree for LOC388242 (if available)
    Gene Tree for LOC388242 (if available)

    Paralogs for LOC388242 Gene

    Paralogs for LOC388242 Gene

    genes like me logo Genes that share paralogs with LOC388242: view

    Variants for LOC388242 Gene

    Sequence variations from dbSNP and Humsavar for LOC388242 Gene

    SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
    rs77881742 -- 29,466,759(+) CTGTT(C/G)TCCTC nc-transcript-variant

    Structural Variations from Database of Genomic Variants (DGV) for LOC388242 Gene

    Variant ID Type Subtype PubMed ID
    dgv845e1 CNV Complex 17122850
    nsv905711 CNV Gain 21882294
    esv29892 CNV Gain 19812545
    esv2714183 CNV Deletion 23290073
    nsv498862 CNV Loss 21111241
    nsv820959 CNV Duplication 20802225
    nsv9426 CNV Gain 18304495
    nsv905712 CNV Gain 21882294
    dgv846e1 CNV Complex 17122850
    dgv847e1 CNV Complex 17122850
    nsv9431 CNV Gain+Loss 18304495
    esv22245 CNV Gain 19812545
    nsv821543 CNV Duplication 20802225
    nsv471389 CNV Duplication 19718026

    Relevant External Links for LOC388242 Gene

    HapMap Linkage Disequilibrium report

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LOC388242 Gene

    Disorders for LOC388242 Gene

    No disorders were found for LOC388242 Gene.

    No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for LOC388242 Gene

    Publications for LOC388242 Gene

    No publications were found for LOC388242 Gene.

    Products for LOC388242 Gene

    Sources for LOC388242 Gene

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