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Aliases for LOC388242 Gene

Aliases for LOC388242 Gene

  • Coiled-Coil Domain Containing 101 Pseudogene 3

External Ids for LOC388242 Gene

Previous GeneCards Identifiers for LOC388242 Gene

  • GC16U900278
  • GC16M029513
  • GC16M029383

Summaries for LOC388242 Gene

GeneCards Summary for LOC388242 Gene

LOC388242 (Coiled-Coil Domain Containing 101 Pseudogene) is a Pseudogene. An important paralog of this gene is LOC613038.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC388242 Gene

Genomics for LOC388242 Gene

Regulatory Elements for LOC388242 Gene

Genomic Location for LOC388242 Gene

Start:
29,464,967 bp from pter
End:
29,467,833 bp from pter
Size:
2,867 bases
Orientation:
Minus strand

Genomic View for LOC388242 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LOC388242 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC388242 Gene

Proteins for LOC388242 Gene

  • Protein details for LOC388242 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    F8VVB4
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    F8VVB4
    Secondary Accessions:

    Protein attributes for LOC388242 Gene

    Size:
    439 amino acids
    Molecular mass:
    46538 Da
    Quaternary structure:
    No Data Available
  • Protein details for LOC388242 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    H0YHM3
    Recommended name:
    Uncharacterized protein
    Protein Accession:
    H0YHM3
    Secondary Accessions:

    Protein attributes for LOC388242 Gene

    Size:
    143 amino acids
    Molecular mass:
    15616 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC388242 Gene

Proteomics data for LOC388242 Gene at MOPED

Post-translational modifications for LOC388242 Gene

No Post-translational modifications

Other Protein References for LOC388242 Gene

No data available for DME Specific Peptides for LOC388242 Gene

Domains for LOC388242 Gene

Protein Domains for LOC388242 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC388242: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC388242 Gene

Function for LOC388242 Gene

Phenotypes for LOC388242 Gene

GenomeRNAi human phenotypes for LOC388242:
genes like me logo Genes that share phenotypes with LOC388242: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for LOC388242 Gene

Localization for LOC388242 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC388242 Gene

Pathways for LOC388242 Gene

SuperPathways for LOC388242 Gene

No Data Available

Interacting Proteins for LOC388242 Gene

Gene Ontology (GO) - Biological Process for LOC388242 Gene

None

No data available for Pathways by source for LOC388242 Gene

Transcripts for LOC388242 Gene

mRNA/cDNA for LOC388242 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC388242 Gene

Coiled-coil domain containing 101 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC388242 Gene

No ASD Table

Relevant External Links for LOC388242 Gene

GeneLoc Exon Structure for
LOC388242

Expression for LOC388242 Gene

mRNA expression in normal human tissues for LOC388242 Gene

SOURCE GeneReport for Unigene cluster for LOC388242 Gene Hs.662549

genes like me logo Genes that share expressions with LOC388242: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for LOC388242 Gene

Orthologs for LOC388242 Gene

This gene was present in the common ancestor of animals.

Orthologs for LOC388242 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 98 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 36
  • 60 (a)
OneToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 36 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Ccdc101 36
  • 40 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 40 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 38 (a)
OneToMany
chicken
(Gallus gallus)
Aves CCDC101 36
  • 38 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 39 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ccdc101 36
  • 38 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Sgf29 36
  • 23 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea T22B7.4 36
  • 6 (a)
ManyToMany
Y17G9B.8 36
  • 14 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 23 (a)
OneToMany
Species with no ortholog for LOC388242:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for LOC388242 Gene

ENSEMBL:
Gene Tree for LOC388242 (if available)
TreeFam:
Gene Tree for LOC388242 (if available)

Paralogs for LOC388242 Gene

Paralogs for LOC388242 Gene

genes like me logo Genes that share paralogs with LOC388242: view

Variants for LOC388242 Gene

Sequence variations from dbSNP and Humsavar for LOC388242 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs77881742 -- 29,466,759(+) CTGTT(C/G)TCCTC nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC388242 Gene

Variant ID Type Subtype PubMed ID
dgv845e1 CNV Complex 17122850
nsv905711 CNV Gain 21882294
esv29892 CNV Gain 19812545
esv2714183 CNV Deletion 23290073
nsv498862 CNV Loss 21111241
nsv820959 CNV Duplication 20802225
nsv9426 CNV Gain 18304495
nsv905712 CNV Gain 21882294
dgv846e1 CNV Complex 17122850
dgv847e1 CNV Complex 17122850
nsv9431 CNV Gain+Loss 18304495
esv22245 CNV Gain 19812545
nsv821543 CNV Duplication 20802225
nsv471389 CNV Duplication 19718026

Relevant External Links for LOC388242 Gene

HapMap Linkage Disequilibrium report
LOC388242

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LOC388242 Gene

Disorders for LOC388242 Gene

No disorders were found for LOC388242 Gene.

No data available for UniProtKB/Swiss-Prot for LOC388242 Gene

Publications for LOC388242 Gene

No publications were found for LOC388242 Gene.

Products for LOC388242 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate LOC388242
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for LOC388242
    • Block miRNA regulation of LOC388242 using miScript Target Protectors

    Sources for LOC388242 Gene

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