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Aliases for LOC388242 Gene

Aliases for LOC388242 Gene

  • SAGA Complex Associated Factor 29 Pseudogene 3
  • RP11-345J4.3 5

External Ids for LOC388242 Gene

Previous GeneCards Identifiers for LOC388242 Gene

  • GC16U900278
  • GC16M029513
  • GC16M029383

Summaries for LOC388242 Gene

GeneCards Summary for LOC388242 Gene

LOC388242 (SAGA Complex Associated Factor 29 Pseudogene) is a Pseudogene. An important paralog of this gene is LOC613038.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC388242 Gene

Genomics for LOC388242 Gene

Regulatory Elements for LOC388242 Gene

Promoters for LOC388242 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001800809 1233 1201

Genomic Location for LOC388242 Gene

29,464,967 bp from pter
29,467,833 bp from pter
2,867 bases
Minus strand

Genomic View for LOC388242 Gene

Genes around LOC388242 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC388242 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC388242 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC388242 Gene

Proteins for LOC388242 Gene

  • Protein details for LOC388242 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein
    Protein Accession:

    Protein attributes for LOC388242 Gene

    439 amino acids
    Molecular mass:
    46538 Da
    Quaternary structure:
    No Data Available
  • Protein details for LOC388242 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein
    Protein Accession:

    Protein attributes for LOC388242 Gene

    132 amino acids
    Molecular mass:
    14124 Da
    Quaternary structure:
    No Data Available
  • Protein details for LOC388242 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein
    Protein Accession:

    Protein attributes for LOC388242 Gene

    143 amino acids
    Molecular mass:
    15616 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LOC388242 Gene

Post-translational modifications for LOC388242 Gene

No Post-translational modifications

Other Protein References for LOC388242 Gene

No data available for DME Specific Peptides for LOC388242 Gene

Domains & Families for LOC388242 Gene

Protein Domains for LOC388242 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LOC388242: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC388242 Gene

Function for LOC388242 Gene

Phenotypes for LOC388242 Gene

GenomeRNAi human phenotypes for LOC388242:
genes like me logo Genes that share phenotypes with LOC388242: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC388242 Gene

Localization for LOC388242 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC388242 Gene

Pathways & Interactions for LOC388242 Gene

SuperPathways for LOC388242 Gene

No Data Available

Interacting Proteins for LOC388242 Gene

Gene Ontology (GO) - Biological Process for LOC388242 Gene


No data available for Pathways by source and SIGNOR curated interactions for LOC388242 Gene

Transcripts for LOC388242 Gene

mRNA/cDNA for LOC388242 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC388242 Gene

Coiled-coil domain containing 101 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC388242 Gene

No ASD Table

Relevant External Links for LOC388242 Gene

GeneLoc Exon Structure for

Expression for LOC388242 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LOC388242 Gene

SOURCE GeneReport for Unigene cluster for LOC388242 Gene:

genes like me logo Genes that share expression patterns with LOC388242: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for LOC388242 Gene

Orthologs for LOC388242 Gene

This gene was present in the common ancestor of animals.

Orthologs for LOC388242 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 35
  • 98 (a)
(Bos Taurus)
Mammalia -- 35
  • 60 (a)
(Monodelphis domestica)
Mammalia -- 35
  • 40 (a)
(Mus musculus)
Mammalia Ccdc101 35
  • 40 (a)
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 38 (a)
(Canis familiaris)
Mammalia -- 35
  • 36 (a)
(Gallus gallus)
Aves CCDC101 35
  • 38 (a)
(Anolis carolinensis)
Reptilia -- 35
  • 39 (a)
(Danio rerio)
Actinopterygii ccdc101 35
  • 38 (a)
fruit fly
(Drosophila melanogaster)
Insecta Sgf29 35
  • 23 (a)
(Caenorhabditis elegans)
Secernentea Y17G9B.8 35
  • 14 (a)
T22B7.4 35
  • 6 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 23 (a)
Species where no ortholog for LOC388242 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for LOC388242 Gene

Gene Tree for LOC388242 (if available)
Gene Tree for LOC388242 (if available)

Paralogs for LOC388242 Gene

Paralogs for LOC388242 Gene

genes like me logo Genes that share paralogs with LOC388242: view

Variants for LOC388242 Gene

Sequence variations from dbSNP and Humsavar for LOC388242 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs149050817 -- 29,468,390(+) TGACC(-/T)TTTTT upstream-variant-2KB
rs375371917 -- 29,467,964(+) ATTTT(-/AC)CCCCC upstream-variant-2KB
rs533946361 -- 29,468,194(+) AGGGG(C/G)TTCCA upstream-variant-2KB
rs537862765 -- 29,468,430(+) TCTTG(C/T)TGCGT upstream-variant-2KB
rs552189717 -- 29,468,195(+) GGGGC(C/T)TCCAG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LOC388242 Gene

Variant ID Type Subtype PubMed ID
esv22245 CNV gain 19812545
esv2714183 CNV deletion 23290073
esv2758641 CNV gain 17122850
esv2758642 CNV gain 17122850
esv29892 CNV gain 19812545
esv3388213 CNV duplication 20981092
esv3392583 CNV duplication 20981092
esv3444439 CNV duplication 20981092
esv3451126 CNV duplication 20981092
nsv1056249 CNV gain 25217958
nsv1078392 CNV duplication 25765185
nsv1078393 CNV duplication 25765185
nsv1139652 CNV duplication 24896259
nsv1141284 CNV duplication 24896259
nsv1146152 CNV duplication 26484159
nsv1148121 CNV duplication 26484159
nsv471389 CNV gain 19718026
nsv498862 CNV loss 21111241
nsv571809 CNV loss 21841781
nsv571810 CNV loss 21841781
nsv571811 CNV loss 21841781
nsv820959 CNV duplication 20802225
nsv821543 CNV duplication 20802225
nsv9426 CNV gain 18304495
nsv9431 CNV gain+loss 18304495
nsv953799 CNV deletion 24416366
nsv977952 CNV duplication 23825009
nsv977953 CNV duplication 23825009
nsv977954 CNV duplication 23825009
nsv977955 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC388242 Gene

Disorders for LOC388242 Gene

Relevant External Links for LOC388242

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for LOC388242 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC388242 Gene

Publications for LOC388242 Gene

No publications were found for LOC388242 Gene.

Products for LOC388242 Gene

Sources for LOC388242 Gene

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