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Aliases for LOC374443 Gene

Aliases for LOC374443 Gene

  • C-Type Lectin Domain Family 2 Member D Pseudogene 3
  • AC010186.2 5

External Ids for LOC374443 Gene

Previous GeneCards Identifiers for LOC374443 Gene

  • GC12U900065
  • GC12P009677
  • GC12P009691
  • GC12P009800
  • GC12P009788
  • GC12P009621
  • GC12P009686

Summaries for LOC374443 Gene

GeneCards Summary for LOC374443 Gene

LOC374443 (C-Type Lectin Domain Family 2 Member D Pseudogene) is a Pseudogene.

Additional gene information for LOC374443 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC374443 Gene

Genomics for LOC374443 Gene

GeneHancer (GH) Regulatory Elements for LOC374443 Gene

Promoters and enhancers for LOC374443 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I009614 Enhancer 0.9 FANTOM5 Ensembl ENCODE 557.6 -0.8 -776 3.3 PKNOX1 RUNX3 MAFK SPI1 LOC374443 CLEC2D KLRB1 KLRF1 ENSG00000214776 ENSG00000257027 CD69 CLECL1 CLEC2B ENSG00000284634
GH12I009646 Promoter/Enhancer 2.3 FANTOM5 Ensembl ENCODE dbSUPER 32.7 +34.4 34449 10 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 IRF4 SLC30A9 ZNF207 ZNF143 LOC105369728 CLEC2D LOC374443 DDX12P KLRB1 CLECL1 CLEC7A M6PR CLEC12A LOC642846
GH12I010611 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.6 +996.1 996061 2.9 HDGF SMAD1 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 MAGOHB ENSG00000213443 KLRA1P EIF2S3B TAS2R43 TAS2R50 ENSG00000257027 ENSG00000256682 STYK1 CLEC2D
GH12I010360 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE dbSUPER 10.6 +747.0 746956 7.3 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 ZNF213 ZNF143 SP3 LOC101928100 KLRK1 DDX12P ENSG00000213443 KLRA1P EIF2S3B ENSG00000257027 ENSG00000256682 CLEC2D ENSG00000255958
GH12I009666 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 10.4 +53.8 53763 9.4 HDGF PKNOX1 SMAD1 IRF4 TCF12 GLIS2 FOS ATF7 RUNX3 RXRA CLEC2D ENSG00000213443 CLECL1 ENSG00000257027 ENSG00000214776 LOC374443 LOC728715 ENSG00000255753 GC12M012111
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC374443 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the LOC374443 gene promoter:

Genomic Locations for LOC374443 Gene

Genomic Locations for LOC374443 Gene
chr12:9,617,284-9,658,415
(GRCh38/hg38)
Size:
41,132 bases
Orientation:
Plus strand
chr12:9,787,188-9,811,008
(GRCh37/hg19)

Genomic View for LOC374443 Gene

Genes around LOC374443 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC374443 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC374443 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC374443 Gene

Proteins for LOC374443 Gene

Post-translational modifications for LOC374443 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC374443 Gene

Domains & Families for LOC374443 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC374443 Gene

Function for LOC374443 Gene

Phenotypes From GWAS Catalog for LOC374443 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC374443 Gene

Localization for LOC374443 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC374443 Gene

Pathways & Interactions for LOC374443 Gene

SuperPathways for LOC374443 Gene

No Data Available

Interacting Proteins for LOC374443 Gene

Gene Ontology (GO) - Biological Process for LOC374443 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC374443 Gene

Drugs & Compounds for LOC374443 Gene

No Compound Related Data Available

Transcripts for LOC374443 Gene

mRNA/cDNA for LOC374443 Gene

(11) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC374443 Gene

C-type lectin domain family 2, member D pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC374443 Gene

No ASD Table

Relevant External Links for LOC374443 Gene

GeneLoc Exon Structure for
LOC374443

Expression for LOC374443 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC374443 Gene

mRNA differential expression in normal tissues according to GTEx for LOC374443 Gene

This gene is overexpressed in Whole Blood (x6.1).

SOURCE GeneReport for Unigene cluster for LOC374443 Gene:

Hs.659158
genes like me logo Genes that share expression patterns with LOC374443: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC374443 Gene

Orthologs for LOC374443 Gene

Evolution for LOC374443 Gene

ENSEMBL:
Gene Tree for LOC374443 (if available)
TreeFam:
Gene Tree for LOC374443 (if available)

No data available for Orthologs for LOC374443 Gene

Paralogs for LOC374443 Gene

No data available for Paralogs for LOC374443 Gene

Variants for LOC374443 Gene

Sequence variations from dbSNP and Humsavar for LOC374443 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000121941 -- 9,657,738(+) T/A non_coding_transcript_variant
rs1000200222 -- 9,651,360(+) G/A intron_variant
rs1000239092 -- 9,627,702(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000312431 -- 9,639,152(+) G/A genic_upstream_transcript_variant, intron_variant
rs1000379086 -- 9,620,155(+) G/A genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC374443 Gene

Variant ID Type Subtype PubMed ID
esv2759878 CNV gain+loss 17122850
nsv1051530 CNV gain 25217958
nsv428271 CNV gain 18775914
nsv603 CNV insertion 18451855
nsv983280 CNV duplication 23825009

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC374443 Gene

Disorders for LOC374443 Gene

Additional Disease Information for LOC374443

No disorders were found for LOC374443 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC374443 Gene

Publications for LOC374443 Gene

  1. Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. (PMID: 17567985) Tsuritani K … Suzuki Y (Genome research 2007) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LOC374443 Gene

Sources for LOC374443 Gene

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