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Aliases for LOC342541 Gene

Aliases for LOC342541 Gene

  • Peptidylprolyl Isomerase A (Cyclophilin A) Pseudogene 3
  • CTD-2501B8.5 5

External Ids for LOC342541 Gene

Previous GeneCards Identifiers for LOC342541 Gene

  • GC00U904168
  • GC17P061889
  • GC17P062022
  • GC17P058902
  • GC17P061548

Summaries for LOC342541 Gene

GeneCards Summary for LOC342541 Gene

LOC342541 (Peptidylprolyl Isomerase A (Cyclophilin A) Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC342541 Gene

Genomics for LOC342541 Gene

Regulatory Elements for LOC342541 Gene

Enhancers for LOC342541 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G063431 1.9 FANTOM5 Ensembl ENCODE dbSUPER 12.3 -37.1 -37068 6.6 HDGF PKNOX1 FOXA2 CREB3L1 ARNT ZFP64 ARID4B SIN3A YBX1 FEZF1 CYB561 LOC342541 ACE TACO1 DDX42 SMARCD2 ENSG00000265282 PIR45110
GH17G063549 1.5 FANTOM5 ENCODE 11.2 +79.4 79406 3.9 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1 ZNF610 DDX42 POLG2 FTSJ3 RNU6-288P TACO1 CYB561 ACE LOC342541 CEP95 DDX5
GH17G063419 1.2 ENCODE dbSUPER 11.8 -51.1 -51101 1.6 FOXA2 CBX3 ARNT SIN3A THRB TCF12 GATA2 EGR1 ETV6 FOS LOC342541 ACE CYB561 TACO1 LOC105371856 ENSG00000263644
GH17G063427 1.1 ENCODE dbSUPER 12.3 -43.3 -43266 0.8 ELF3 FOXA2 MLX ARID4B SIN3A NFXL1 RAD21 ZNF366 ETV6 MIXL1 CYB561 LOC342541 ACE TACO1 ENSG00000263644 LOC105371856
GH17G063612 1.2 Ensembl ENCODE 11.1 +140.8 140806 0.4 HDAC1 ELF3 ARID4B ZBTB40 RAD21 RFX5 SLC30A9 ZNF121 GATA2 ZNF143 CYB561 ACE LOC342541 DCAF7 LOC390806 GC17P063614
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC342541 on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the LOC342541 gene promoter:

Genomic Location for LOC342541 Gene

Chromosome:
17
Start:
63,471,595 bp from pter
End:
63,472,302 bp from pter
Size:
708 bases
Orientation:
Plus strand

Genomic View for LOC342541 Gene

Genes around LOC342541 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC342541 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC342541 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC342541 Gene

Proteins for LOC342541 Gene

Post-translational modifications for LOC342541 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC342541 Gene

Domains & Families for LOC342541 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC342541 Gene

Function for LOC342541 Gene

Phenotypes for LOC342541 Gene

GenomeRNAi human phenotypes for LOC342541:
genes like me logo Genes that share phenotypes with LOC342541: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC342541 Gene

Localization for LOC342541 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC342541 Gene

Pathways & Interactions for LOC342541 Gene

SuperPathways for LOC342541 Gene

No Data Available

Interacting Proteins for LOC342541 Gene

Gene Ontology (GO) - Biological Process for LOC342541 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC342541 Gene

Drugs & Compounds for LOC342541 Gene

No Compound Related Data Available

Transcripts for LOC342541 Gene

mRNA/cDNA for LOC342541 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC342541 Gene

No ASD Table

Relevant External Links for LOC342541 Gene

GeneLoc Exon Structure for
LOC342541

Expression for LOC342541 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC342541 Gene

mRNA differential expression in normal tissues according to GTEx for LOC342541 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x4.8) and Pituitary (x4.0).
genes like me logo Genes that share expression patterns with LOC342541: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC342541 Gene

Orthologs for LOC342541 Gene

Evolution for LOC342541 Gene

ENSEMBL:
Gene Tree for LOC342541 (if available)
TreeFam:
Gene Tree for LOC342541 (if available)

No data available for Orthologs for LOC342541 Gene

Paralogs for LOC342541 Gene

No data available for Paralogs for LOC342541 Gene

Variants for LOC342541 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC342541 Gene

Disorders for LOC342541 Gene

No disorders were found for LOC342541 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC342541 Gene

Publications for LOC342541 Gene

No publications were found for LOC342541 Gene.

Products for LOC342541 Gene

Sources for LOC342541 Gene

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