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Aliases for LOC285626 Gene

Subcategory (RNA class) for LOC285626 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC285626 Gene

  • Uncharacterized LOC285626 3
  • AC008691.1 5

External Ids for LOC285626 Gene

Previous GeneCards Identifiers for LOC285626 Gene

  • GC05P158694
  • GC05U900197
  • GC05P158739
  • GC05P158691
  • GC05P158738

Summaries for LOC285626 Gene

GeneCards Summary for LOC285626 Gene

LOC285626 (Uncharacterized LOC285626) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC285626 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC285626 Gene

Genomics for LOC285626 Gene

Regulatory Elements for LOC285626 Gene

Enhancers for LOC285626 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H159411 1.4 FANTOM5 Ensembl ENCODE 11.2 +101.9 101862 1 KLF1 MAX EBF1 RELA POLR2A EED PATZ1 ATF7 PRDM10 ETV6 IL12B LOC285626 RNF145 GC05P159421
GH05H159459 1.1 FANTOM5 Ensembl 10 +149.5 149538 0 EBF1 BATF RELA EED ZNF207 FOS ETV6 RUNX3 IKZF2 CREM IL12B LOC285626 RNF145 GC05P159458 GC05P159459 LINC01845
GH05H159456 0.9 FANTOM5 10 +146.1 146122 0 PKNOX1 TBL1XR1 SIN3A BMI1 BATF ZNF207 FOS ATF7 ETV6 RUNX3 IL12B LOC285626 RNF145 GC05P159458 GC05P159459 GC05P159421
GH05H159458 0.8 ENCODE 10 +147.8 147773 0 PKNOX1 TBL1XR1 BMI1 BATF ZNF207 ATF7 ETV6 RUNX3 CREM IKZF2 IL12B LOC285626 GC05P159458 GC05P159459 GC05P159421
GH05H159362 0.6 ENCODE 11.1 +51.7 51683 0 CTCF POLR2A IKZF1 BATF IKZF2 SPI1 IL12B LOC285626 GC05P159421
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC285626 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC285626 Gene

Chromosome:
5
Start:
159,310,745 bp from pter
End:
159,805,536 bp from pter
Size:
494,792 bases
Orientation:
Plus strand

Genomic View for LOC285626 Gene

Genes around LOC285626 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC285626 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC285626 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC285626 Gene

Proteins for LOC285626 Gene

Post-translational modifications for LOC285626 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC285626 Gene

Domains & Families for LOC285626 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC285626 Gene

Function for LOC285626 Gene

Phenotypes From GWAS Catalog for LOC285626 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC285626 Gene

Localization for LOC285626 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC285626 Gene

Pathways & Interactions for LOC285626 Gene

SuperPathways for LOC285626 Gene

No Data Available

Interacting Proteins for LOC285626 Gene

Gene Ontology (GO) - Biological Process for LOC285626 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC285626 Gene

Drugs & Compounds for LOC285626 Gene

No Compound Related Data Available

Transcripts for LOC285626 Gene

mRNA/cDNA for LOC285626 Gene

(2) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC285626 Gene

Uncharacterized LOC285626:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC285626 Gene

No ASD Table

Relevant External Links for LOC285626 Gene

GeneLoc Exon Structure for
LOC285626

Expression for LOC285626 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC285626 Gene

SOURCE GeneReport for Unigene cluster for LOC285626 Gene:

Hs.449275
genes like me logo Genes that share expression patterns with LOC285626: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC285626 Gene

Orthologs for LOC285626 Gene

Evolution for LOC285626 Gene

ENSEMBL:
Gene Tree for LOC285626 (if available)
TreeFam:
Gene Tree for LOC285626 (if available)

No data available for Orthologs for LOC285626 Gene

Paralogs for LOC285626 Gene

No data available for Paralogs for LOC285626 Gene

Variants for LOC285626 Gene

Sequence variations from dbSNP and Humsavar for LOC285626 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs886060355 Uncertain significance 159,330,460(-) GGGCC(A/G)TTGGA upstream-variant-2KB, utr-variant-5-prime
rs1000051958 -- 159,362,276(+) GACCA(A/G)AGGGA nc-transcript-variant
rs1000098402 -- 159,352,437(+) TGTCT(C/G/T)CCTTT intron-variant
rs1000183099 -- 159,333,614(+) CAATA(C/T)ATGCA intron-variant
rs1000254393 -- 159,359,662(+) TATCT(A/C)TTTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC285626 Gene

Variant ID Type Subtype PubMed ID
esv3607337 CNV gain 21293372
nsv522395 CNV loss 19592680

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC285626 Gene

Disorders for LOC285626 Gene

Relevant External Links for LOC285626

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC285626

No disorders were found for LOC285626 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC285626 Gene

Publications for LOC285626 Gene

  1. Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. (PMID: 21833088) International Multiple Sclerosis Genetics Consortium … Compston A (Nature 2011) 3 60
  2. Genome-wide meta-analysis identifies novel multiple sclerosis susceptibility loci. (PMID: 22190364) Patsopoulos NA … de Bakker PI (Annals of neurology 2011) 3 60
  3. Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci. (PMID: 21102463) Franke A … Parkes M (Nature genetics 2010) 3 60
  4. Genome-wide association study identifies a psoriasis susceptibility locus at TRAF3IP2. (PMID: 20953188) Ellinghaus E … Franke A (Nature genetics 2010) 3 60
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for LOC285626 Gene

Sources for LOC285626 Gene

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