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Aliases for LOC284379 Gene

Aliases for LOC284379 Gene

  • Solute Carrier Family 7 Member 3 Pseudogene 3
  • CTB-167G5.6 5

External Ids for LOC284379 Gene

Previous GeneCards Identifiers for LOC284379 Gene

  • GC19M054464
  • GC19M058778
  • GC19M058794
  • GC19M054102

Summaries for LOC284379 Gene

GeneCards Summary for LOC284379 Gene

LOC284379 (Solute Carrier Family 7 Member 3 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC284379 Gene

Genomics for LOC284379 Gene

Regulatory Elements for LOC284379 Gene

Enhancers for LOC284379 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G053618 1.2 Ensembl ENCODE 6.2 -12.4 -12361 4.7 FOXA2 MLX ARID4B ZNF48 SP5 MIER2 PPARG KAT8 SREBF1 MIER3 ZNF415 LOC284379 OSTCP3 RN7SL317P
GH19G054339 0.9 Ensembl ENCODE 6.5 -731.5 -731455 0.9 MTA2 BHLHE40 TAL1 EBF1 MCM7 TCF12 NFIC NCOR1 EED IKZF1 LOC284379 DNAAF3 LILRA4 GC19M054352
GH19G053611 1.4 ENCODE dbSUPER 0.7 -4.5 -4515 3.1 CREB3L1 AGO1 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ZNF765 MIR520A RNU6-698P MIR526B MIR525 MIR519B MIR520B MIR518F MIR518B MIR520C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC284379 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC284379 Gene

Chromosome:
19
Start:
53,599,628 bp from pter
End:
53,608,451 bp from pter
Size:
8,824 bases
Orientation:
Minus strand

Genomic View for LOC284379 Gene

Genes around LOC284379 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC284379 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC284379 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC284379 Gene

Proteins for LOC284379 Gene

Post-translational modifications for LOC284379 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC284379 Gene

Domains & Families for LOC284379 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC284379 Gene

Function for LOC284379 Gene

Phenotypes for LOC284379 Gene

GenomeRNAi human phenotypes for LOC284379:
genes like me logo Genes that share phenotypes with LOC284379: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC284379 Gene

Localization for LOC284379 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC284379 Gene

Pathways & Interactions for LOC284379 Gene

SuperPathways for LOC284379 Gene

No Data Available

Interacting Proteins for LOC284379 Gene

Gene Ontology (GO) - Biological Process for LOC284379 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC284379 Gene

Drugs & Compounds for LOC284379 Gene

No Compound Related Data Available

Transcripts for LOC284379 Gene

mRNA/cDNA for LOC284379 Gene

(3) Additional mRNA sequences :
(11) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC284379 Gene

Solute carrier family 7 (cationic amino acid transporter, y+ system), member 3 pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC284379 Gene

No ASD Table

Relevant External Links for LOC284379 Gene

GeneLoc Exon Structure for
LOC284379

Expression for LOC284379 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC284379 Gene

mRNA differential expression in normal tissues according to GTEx for LOC284379 Gene

This gene is overexpressed in Bladder (x24.3), Adipose - Visceral (Omentum) (x8.4), Breast - Mammary Tissue (x6.3), and Muscle - Skeletal (x5.0).

SOURCE GeneReport for Unigene cluster for LOC284379 Gene:

Hs.631571
genes like me logo Genes that share expression patterns with LOC284379: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC284379 Gene

Orthologs for LOC284379 Gene

This gene was present in the common ancestor of chordates.

Orthologs for LOC284379 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia -- 35
  • 11 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia AU018091 35
  • 10 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 35
  • 8 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 8 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 8 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 35
  • 8 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 9 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii CT573152.3 35
  • 8 (a)
ManyToMany
slc7a3a 35
  • 8 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 7 (a)
OneToMany
Species where no ortholog for LOC284379 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LOC284379 Gene

ENSEMBL:
Gene Tree for LOC284379 (if available)
TreeFam:
Gene Tree for LOC284379 (if available)

Paralogs for LOC284379 Gene

No data available for Paralogs for LOC284379 Gene

Variants for LOC284379 Gene

Sequence variations from dbSNP and Humsavar for LOC284379 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000293661 -- 53,601,837(+) TTTTG(A/G)GAAGT intron-variant
rs1000587023 -- 53,601,724(+) TGATC(C/T)ACCCG intron-variant
rs1001029834 -- 53,602,984(+) ATATA(C/T)ATTTG intron-variant
rs1001061463 -- 53,602,483(+) GCCTC(A/C)CAAGT intron-variant
rs1001364135 -- 53,601,902(+) AACTG(C/T)CCTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC284379 Gene

Variant ID Type Subtype PubMed ID
esv2718812 CNV deletion 23290073
esv2762049 CNV gain 21179565
esv3574831 CNV gain 25503493
esv3644762 CNV loss 21293372
esv3644763 CNV loss 21293372
nsv1055718 CNV gain 25217958
nsv1055773 CNV gain 25217958
nsv523944 CNV loss 19592680
nsv580107 CNV gain 21841781

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC284379 Gene

Disorders for LOC284379 Gene

Relevant External Links for LOC284379

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC284379

No disorders were found for LOC284379 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC284379 Gene

Publications for LOC284379 Gene

  1. A genome-wide RNAi screen identifies multiple synthetic lethal interactions with the Ras oncogene. (PMID: 19490893) Luo J. … Elledge S.J. (Cell 2009) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC284379 Gene

Sources for LOC284379 Gene

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