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Aliases for LOC246784 Gene

Aliases for LOC246784 Gene

  • SMU1, DNA Replication Regulator And Spliceosomal Factor Pseudogene 3
  • AL157713.1 5

External Ids for LOC246784 Gene

Previous GeneCards Identifiers for LOC246784 Gene

  • GC01U990487
  • GC01M153806
  • GC01M154245
  • GC01M153842
  • GC01M155295
  • GC01M157028

Summaries for LOC246784 Gene

GeneCards Summary for LOC246784 Gene

LOC246784 (SMU1, DNA Replication Regulator And Spliceosomal Factor Pseudogene) is a Pseudogene.

Additional gene information for LOC246784 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC246784 Gene

Genomics for LOC246784 Gene

GeneHancer (GH) Regulatory Elements for LOC246784 Gene

Promoters and enhancers for LOC246784 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I156111 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 49.9 +939.4 939415 19.4 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 LMNA GON4L CLK2 RRNAD1 KHDC4 LOC246784 MSTO1 MSTO2P PRCC ISG20L2
GH01I156656 Enhancer 2.2 VISTA FANTOM5 Ensembl ENCODE dbSUPER 53.9 +396.5 396545 15.3 CLOCK MLX ZFP64 DMAP1 IRF4 ZNF213 E2F8 ZNF416 ZNF143 ZNF263 GON4L KHDC4 RRNAD1 LOC246784 PRCC MSTO2P LMNA ISG20L2 YY1AP1 CCT3
GH01I156486 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 30.3 +561.9 561940 25.4 CLOCK FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 MEF2D RRNAD1 GON4L KHDC4 ENSG00000271267 MSTO2P MSTO1 LOC246784 ISG20L2 ENSG00000246203
GH01I156740 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 29.7 +313.9 313942 13.6 CLOCK MLX DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF263 SP3 HDGF MRPL24 KHDC4 GON4L RRNAD1 LOC246784 PRCC CCT3 SYT11 ISG20L2
GH01I156765 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 30.3 +292.9 292858 4.5 CLOCK ZFP64 FEZF1 DMAP1 YY1 ZNF213 ZNF143 SP3 MEF2D NBN HDGF PRCC RRNAD1 GON4L KHDC4 LOC246784 ISG20L2 CCT3 MRPL24 LRRC71
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC246784 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC246784 Gene

Genomic Locations for LOC246784 Gene
chr1:157,058,910-157,060,804
(GRCh38/hg38)
Size:
1,895 bases
Orientation:
Minus strand
chr1:157,028,702-157,030,596
(GRCh37/hg19)

Genomic View for LOC246784 Gene

Genes around LOC246784 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC246784 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC246784 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC246784 Gene

Proteins for LOC246784 Gene

Post-translational modifications for LOC246784 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC246784 Gene

Domains & Families for LOC246784 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC246784 Gene

Function for LOC246784 Gene

Phenotypes From GWAS Catalog for LOC246784 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC246784 Gene

Localization for LOC246784 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC246784 Gene

Pathways & Interactions for LOC246784 Gene

SuperPathways for LOC246784 Gene

No Data Available

Interacting Proteins for LOC246784 Gene

Gene Ontology (GO) - Biological Process for LOC246784 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC246784 Gene

Drugs & Compounds for LOC246784 Gene

No Compound Related Data Available

Transcripts for LOC246784 Gene

mRNA/cDNA for LOC246784 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC246784 Gene

No ASD Table

Relevant External Links for LOC246784 Gene

GeneLoc Exon Structure for
LOC246784

Expression for LOC246784 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC246784 Gene

genes like me logo Genes that share expression patterns with LOC246784: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC246784 Gene

Orthologs for LOC246784 Gene

Evolution for LOC246784 Gene

ENSEMBL:
Gene Tree for LOC246784 (if available)
TreeFam:
Gene Tree for LOC246784 (if available)

No data available for Orthologs for LOC246784 Gene

Paralogs for LOC246784 Gene

No data available for Paralogs for LOC246784 Gene

Variants for LOC246784 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC246784 Gene

Disorders for LOC246784 Gene

No disorders were found for LOC246784 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC246784 Gene

Publications for LOC246784 Gene

  1. Cloning and molecular characterization of a novel gene encoding a WD-repeat protein expressed in restricted areas of adult rat brain. (PMID: 11410362) Di Benedetto AJ … Glavan BJ (Gene 2001) 3 58

Products for LOC246784 Gene

Sources for LOC246784 Gene

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