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Aliases for LOC171391 Gene

Subcategory (RNA class) for LOC171391 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC171391 Gene

  • Uncharacterized LOC171391 3
  • AP006621.5 5
  • NS3BP 3

External Ids for LOC171391 Gene

Previous GeneCards Identifiers for LOC171391 Gene

  • GC11P000783
  • GC11P000784
  • GC11P000786
  • GC11P000788
  • GC11P000791

Summaries for LOC171391 Gene

GeneCards Summary for LOC171391 Gene

LOC171391 (Uncharacterized LOC171391) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC171391 Gene

Genomics for LOC171391 Gene

Regulatory Elements for LOC171391 Gene

Enhancers for LOC171391 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G000818 1.3 ENCODE dbSUPER 24.6 +43.0 42985 4.6 PKNOX1 CREB3L1 AGO1 ARID4B SIN3A DMAP1 YY1 ZNF207 FOS KLF13 RPLP2 LOC171391 RIC8A SNORA52 PHRF1 CRACR2B PNPLA2 CD151 GC11M000811
GH11G000725 1.6 Ensembl ENCODE dbSUPER 14.3 -50.0 -49969 5.2 HDGF FOXA2 ARNT CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF143 FOS RPLP2 LOC171391 TMEM80 CD151 EPS8L2 ENSG00000269915 LOC105376509
GH11G000745 1.6 FANTOM5 ENCODE dbSUPER 10.3 -29.6 -29569 5.1 HDGF FOXA2 PKNOX1 ARNT CREB3L1 ARID4B SIN3A SLC30A9 CBX5 ZNF143 RPLP2 PHRF1 SNORA52 TALDO1 ENSG00000255237 IRF7 RIC8A LOC171391 TSPAN4 DEAF1
GH11G000737 1.3 FANTOM5 Ensembl ENCODE dbSUPER 12.3 -39.6 -39575 1.8 ZNF121 TFAP4 PKNOX1 PBX2 CEBPB LOC171391 EPS8L2 TALDO1 TMEM80 SIGIRR PKP3 GC11P000742 LOC105376509
GH11G000782 1.3 Ensembl ENCODE dbSUPER 10.8 +6.2 6204 1.6 CTCF RB1 AGO1 SIN3A ZIC2 RAD21 HIC1 ZFHX2 ZNF366 POLR2A LOC171391 ENSG00000255142 CEND1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC171391 on UCSC Golden Path with GeneCards custom track

Promoters for LOC171391 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000035688 -178 1601 ARNT AGO1 ARID4B SIN3A DMAP1 YY1 ZNF121 GLIS2 ZNF143 REST

Genomic Location for LOC171391 Gene

Chromosome:
11
Start:
777,578 bp from pter
End:
784,297 bp from pter
Size:
6,720 bases
Orientation:
Plus strand

Genomic View for LOC171391 Gene

Genes around LOC171391 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC171391 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC171391 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC171391 Gene

Proteins for LOC171391 Gene

Post-translational modifications for LOC171391 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC171391 Gene

Domains & Families for LOC171391 Gene

Suggested Antigen Peptide Sequences for LOC171391 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for LOC171391 Gene

Function for LOC171391 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC171391 Gene

Localization for LOC171391 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC171391 Gene

Pathways & Interactions for LOC171391 Gene

SuperPathways for LOC171391 Gene

No Data Available

Interacting Proteins for LOC171391 Gene

Gene Ontology (GO) - Biological Process for LOC171391 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC171391 Gene

Drugs & Compounds for LOC171391 Gene

No Compound Related Data Available

Transcripts for LOC171391 Gene

mRNA/cDNA for LOC171391 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC171391 Gene

No ASD Table

Relevant External Links for LOC171391 Gene

GeneLoc Exon Structure for
LOC171391

Expression for LOC171391 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC171391 Gene

Orthologs for LOC171391 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC171391 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 98 (a)
OneToOne
Species where no ortholog for LOC171391 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC171391 Gene

ENSEMBL:
Gene Tree for LOC171391 (if available)
TreeFam:
Gene Tree for LOC171391 (if available)

Paralogs for LOC171391 Gene

No data available for Paralogs for LOC171391 Gene

Variants for LOC171391 Gene

Sequence variations from dbSNP and Humsavar for LOC171391 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000167206 -- 776,293(+) TCTTA(C/T)ATAAG intron-variant, upstream-variant-2KB
rs1000352175 -- 776,331(+) ACTTA(C/T)CGAGG intron-variant, upstream-variant-2KB
rs1000372505 -- 780,570(+) TTGCA(C/T)GTGCT intron-variant
rs1000424456 -- 776,108(+) CTCCC(C/G)AGTAG intron-variant, upstream-variant-2KB
rs1000456980 -- 775,836(+) GTCCT(A/C)CCAGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for LOC171391 Gene

Variant ID Type Subtype PubMed ID
dgv1013n100 CNV gain 25217958
dgv182e199 CNV deletion 23128226
esv2314422 CNV deletion 18987734
esv2743873 CNV deletion 23290073
esv2759794 CNV loss 17122850
nsv1040044 CNV gain+loss 25217958
nsv1159791 CNV deletion 26073780
nsv469923 CNV loss 18288195
nsv552870 CNV loss 21841781
nsv552871 CNV loss 21841781
nsv8759 CNV gain 18304495
nsv951272 CNV deletion 24416366

Variation tolerance for LOC171391 Gene

Gene Damage Index Score: 0.84; 17.49% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for LOC171391 Gene

Disorders for LOC171391 Gene

Relevant External Links for LOC171391

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC171391

No disorders were found for LOC171391 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC171391 Gene

Publications for LOC171391 Gene

No publications were found for LOC171391 Gene.

Products for LOC171391 Gene

Sources for LOC171391 Gene

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