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Aliases for LOC171391 Gene

Subcategory (RNA class) for LOC171391 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC171391 Gene

  • Uncharacterized LOC171391 3
  • AP006621.3 5
  • NS3BP 3

External Ids for LOC171391 Gene

Previous GeneCards Identifiers for LOC171391 Gene

  • GC11P000783
  • GC11P000784
  • GC11P000786
  • GC11P000788
  • GC11P000791
  • GC11P000792
  • GC11P000794

Summaries for LOC171391 Gene

GeneCards Summary for LOC171391 Gene

LOC171391 (Uncharacterized LOC171391) is an RNA Gene, and is affiliated with the ncRNA class.

Additional gene information for LOC171391 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC171391 Gene

Genomics for LOC171391 Gene

GeneHancer (GH) Regulatory Elements for LOC171391 Gene

Promoters and enhancers for LOC171391 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I000775 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 550.8 -0.2 -244 3.9 ARNT ARID4B SIN3A DMAP1 YY1 ZNF121 POLR2B GLIS2 ZNF143 FOS GATD1 LOC171391 ENSG00000255108 TALDO1 TMEM80 MIR210
GH11I000818 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 24.6 +43.0 42985 4.6 PKNOX1 FOXA2 SMAD1 ARID4B SIN3A DMAP1 YY1 ZNF207 FOS SP3 PNPLA2 RPLP2 ENSG00000255108 LOC171391 TMEM80 RIC8A BET1L SNORA52 PHRF1 CRACR2B
GH11I000745 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.3 -29.6 -29569 5.1 HDGF ATF1 FOXA2 ARID4B SIN3A ZNF48 POLR2B GLIS2 ZNF143 ATF7 TALDO1 ENSG00000255108 RPLP2 IRF7 LOC171391 DEAF1 TMEM80 IFITM2 GC11P000742 LOC105376509
GH11I000803 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 10.6 +27.4 27408 3.2 HDGF PKNOX1 ATF1 ARNT ZFP64 ARID4B SIN3A DMAP1 TCF12 GTF3C2 PIDD1 ENSG00000255108 RPLP2 LOC171391 CRACR2B SLC25A22
GH11I000725 Enhancer 1.4 Ensembl ENCODE dbSUPER 14.3 -50.0 -49969 5.2 HDGF FOXA2 ARNT ARID4B SIN3A DMAP1 ZNF143 FOS PAF1 SP3 ENSG00000269915 ENSG00000255108 RPLP2 LOC171391 TMEM80 CD151 EPS8L2 LOC105376509
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC171391 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC171391 Gene

Genomic Locations for LOC171391 Gene
chr11:777,578-784,297
(GRCh38/hg38)
Size:
6,720 bases
Orientation:
Plus strand
chr11:779,359-780,755
(GRCh37/hg19)

Genomic View for LOC171391 Gene

Genes around LOC171391 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC171391 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC171391 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC171391 Gene

Proteins for LOC171391 Gene

Post-translational modifications for LOC171391 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC171391 Gene

Domains & Families for LOC171391 Gene

Suggested Antigen Peptide Sequences for LOC171391 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for LOC171391 Gene

Function for LOC171391 Gene

Phenotypes From GWAS Catalog for LOC171391 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC171391 Gene

Localization for LOC171391 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC171391 Gene

Pathways & Interactions for LOC171391 Gene

SuperPathways for LOC171391 Gene

No Data Available

Interacting Proteins for LOC171391 Gene

Gene Ontology (GO) - Biological Process for LOC171391 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC171391 Gene

Drugs & Compounds for LOC171391 Gene

No Compound Related Data Available

Transcripts for LOC171391 Gene

mRNA/cDNA for LOC171391 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC171391 Gene

No ASD Table

Relevant External Links for LOC171391 Gene

GeneLoc Exon Structure for
LOC171391

Expression for LOC171391 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC171391 Gene

Orthologs for LOC171391 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for LOC171391 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 98 (a)
OneToOne
Species where no ortholog for LOC171391 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for LOC171391 Gene

ENSEMBL:
Gene Tree for LOC171391 (if available)
TreeFam:
Gene Tree for LOC171391 (if available)

Paralogs for LOC171391 Gene

No data available for Paralogs for LOC171391 Gene

Variants for LOC171391 Gene

Sequence variations from dbSNP and Humsavar for LOC171391 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000167206 -- 776,293(+) T/C upstream_transcript_variant
rs1000352175 -- 776,331(+) T/C upstream_transcript_variant
rs1000372505 -- 780,570(+) C/T intron_variant
rs1000424456 -- 776,108(+) G/C upstream_transcript_variant
rs1000456980 -- 775,836(+) A/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LOC171391 Gene

Variant ID Type Subtype PubMed ID
dgv1013n100 CNV gain 25217958
dgv182e199 CNV deletion 23128226
esv2314422 CNV deletion 18987734
esv2743873 CNV deletion 23290073
esv2759794 CNV loss 17122850
nsv1040044 CNV gain+loss 25217958
nsv1159791 CNV deletion 26073780
nsv469923 CNV loss 18288195
nsv552870 CNV loss 21841781
nsv552871 CNV loss 21841781
nsv8759 CNV gain 18304495
nsv951272 CNV deletion 24416366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Additional Variant Information for LOC171391 Gene

Disorders for LOC171391 Gene

Additional Disease Information for LOC171391

No disorders were found for LOC171391 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC171391 Gene

Publications for LOC171391 Gene

No publications were found for LOC171391 Gene.

Products for LOC171391 Gene

Sources for LOC171391 Gene

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