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Aliases for LOC151484 Gene

Subcategory (RNA class) for LOC151484 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC151484 Gene

  • Uncharacterized LOC151484 3
  • AC012507.3 5

External Ids for LOC151484 Gene

Previous GeneCards Identifiers for LOC151484 Gene

  • GC02P229811
  • GC02P230483
  • GC02P231715
  • GC02U900513
  • GC02P231953
  • GC02P231754

Summaries for LOC151484 Gene

GeneCards Summary for LOC151484 Gene

LOC151484 (Uncharacterized LOC151484) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC151484 Gene

Genomics for LOC151484 Gene

Regulatory Elements for LOC151484 Gene

Enhancers for LOC151484 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G230847 1.2 Ensembl ENCODE 12.3 -38.4 -38382 0.6 ARID4B DMAP1 ZNF48 ZNF143 FOS PAF1 MXD4 JUNB REST MIER2 LOC151484 SPATA3 SPATA3-AS1 ENSG00000230385 PSMD1 C2orf72 ENSG00000270891 ITM2C
GH02G230924 1.2 Ensembl ENCODE 11.9 +38.9 38904 2.5 HDGF TBP PKNOX1 TBL1XR1 SIN3A BMI1 RAD21 RFX5 GLIS2 EGR1 SPATA3 SPATA3-AS1 LOC151484 PSMD1 GPR55 ENSG00000283164 GC02M230912
GH02G230850 0.8 ENCODE 11.6 -36.3 -36280 0.2 HDGF CTCF PTBP1 PKNOX1 AGO1 SIN3A ZNF48 RAD21 GLIS2 EGR1 LOC151484 ENSG00000230385 SPATA3 SPATA3-AS1 PSMD1 C2orf72 ITM2C ENSG00000270891
GH02G230923 0.7 FANTOM5 11.9 +36.8 36768 0.1 MTA2 CBFB MAFG GATAD2B RELA POLR2A IKZF1 EED IKZF2 SPATA3 SPATA3-AS1 LOC151484 PSMD1 GPR55 ENSG00000283164 ENSG00000230385
GH02G230876 1.2 Ensembl ENCODE dbSUPER 5.2 -7.7 -7717 4.2 KLF1 KLF17 MAX ZFHX2 POLR2A ZBTB48 ZNF366 PRDM10 EGR2 CEBPB ENSG00000230385 GPR55 LOC151484 ITM2C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC151484 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC151484 Gene

Chromosome:
2
Start:
230,886,500 bp from pter
End:
230,904,517 bp from pter
Size:
18,018 bases
Orientation:
Plus strand

Genomic View for LOC151484 Gene

Genes around LOC151484 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC151484 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC151484 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC151484 Gene

Proteins for LOC151484 Gene

Post-translational modifications for LOC151484 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC151484 Gene

Domains & Families for LOC151484 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC151484 Gene

Function for LOC151484 Gene

Phenotypes for LOC151484 Gene

genes like me logo Genes that share phenotypes with LOC151484: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC151484 Gene

Localization for LOC151484 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC151484 Gene

Pathways & Interactions for LOC151484 Gene

SuperPathways for LOC151484 Gene

No Data Available

Interacting Proteins for LOC151484 Gene

Gene Ontology (GO) - Biological Process for LOC151484 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC151484 Gene

Drugs & Compounds for LOC151484 Gene

No Compound Related Data Available

Transcripts for LOC151484 Gene

mRNA/cDNA for LOC151484 Gene

(2) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC151484 Gene

Uncharacterized LOC151484:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC151484 Gene

No ASD Table

Relevant External Links for LOC151484 Gene

GeneLoc Exon Structure for
LOC151484

Expression for LOC151484 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC151484 Gene

SOURCE GeneReport for Unigene cluster for LOC151484 Gene:

Hs.559309
genes like me logo Genes that share expression patterns with LOC151484: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC151484 Gene

Orthologs for LOC151484 Gene

Evolution for LOC151484 Gene

ENSEMBL:
Gene Tree for LOC151484 (if available)
TreeFam:
Gene Tree for LOC151484 (if available)

No data available for Orthologs for LOC151484 Gene

Paralogs for LOC151484 Gene

No data available for Paralogs for LOC151484 Gene

Variants for LOC151484 Gene

Sequence variations from dbSNP and Humsavar for LOC151484 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000136267 -- 230,904,290(+) GCTTT(C/T)AGGTA intron-variant
rs1000188251 -- 230,904,108(+) GCTGG(A/T)GCATC intron-variant
rs1000374855 -- 230,902,452(+) CCTTC(C/T)CAAAG intron-variant
rs1000512850 -- 230,903,617(+) GCTGC(A/C)GTGAG intron-variant
rs1000833644 -- 230,895,250(+) GAACC(G/T)GGGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC151484 Gene

Variant ID Type Subtype PubMed ID
esv3594616 CNV loss 21293372
nsv470522 CNV loss 18288195
nsv834565 CNV gain 17160897

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC151484 Gene

Disorders for LOC151484 Gene

Relevant External Links for LOC151484

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC151484

No disorders were found for LOC151484 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC151484 Gene

Publications for LOC151484 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC151484 Gene

Sources for LOC151484 Gene

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