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LOC150776 Gene(Pseudogene)

Sphingomyelin Phosphodiesterase 4, Neutral Membrane (Neutral Sphingomyelinase-3) Pseudogene

GCID:
GC02P131619
GIFtS:
13

Aliases for LOC150776 Gene

Aliases for LOC150776 Gene

  • Sphingomyelin Phosphodiesterase 4, Neutral Membrane (Neutral Sphingomyelinase-3) Pseudogene 3
  • AC073869.1 5

External Ids for LOC150776 Gene

Previous GeneCards Identifiers for LOC150776 Gene

  • GC02P129812
  • GC02P130434
  • GC02P132271
  • GC02P131958
  • GC02P132270
  • GC02P131494
  • GC02P131496
  • GC02P131533
  • GC02P131550
  • GC02P131563
  • GC02P131599

Summaries for LOC150776 Gene

GeneCards Summary for LOC150776 Gene

LOC150776 (Sphingomyelin Phosphodiesterase 4, Neutral Membrane (Neutral Sphingomyelinase-3) Pseudogene) is a Pseudogene.

Additional gene information for LOC150776 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC150776 Gene

Genomics for LOC150776 Gene

Regulatory Elements for LOC150776 Gene

Enhancers for LOC150776 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H132264 1.9 FANTOM5 Ensembl ENCODE dbSUPER 85.7 +776.7 776741 9 HDGF PKNOX1 ARNT ZFP64 SIN3A YBX1 ZBTB7B YY1 CBX5 ZNF143 LOC150776 ENSG00000272769 ZNF806 FAM201B ENSG00000213222 CCDC74A C2orf27A LOC105373622 GC02P132278
GH02H131490 1.4 ENCODE dbSUPER 71.5 -0.2 -244 3 HDGF FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 SLC30A9 LOC150776 MZT2A ENSG00000272769 MIR4784
GH02H131527 0.9 ENCODE 52.5 +35.0 35010 0 HDAC1 HDGF PKNOX1 SIN3A BMI1 ZNF2 EGR1 ATF7 IKZF2 ELF1 LOC150776 PIR48903 CCDC74A
GH02H131514 0.6 ENCODE 62.3 +21.9 21930 0 CBFB IKZF1 MLLT1 RUNX3 IKZF2 SPI1 RELA LOC150776 PIR47056
GH02H131498 0.5 ENCODE 71.2 +5.7 5702 0 ZNF687 JUNB DPF2 RUNX3 BATF LOC150776 PIR47056
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC150776 on UCSC Golden Path with GeneCards custom track

Promoters for LOC150776 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000123165 -13 2801 HDGF FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 SLC30A9

Genomic Location for LOC150776 Gene

Chromosome:
2
Start:
131,492,813 bp from pter
End:
131,521,576 bp from pter
Size:
28,764 bases
Orientation:
Plus strand

Genomic View for LOC150776 Gene

Genes around LOC150776 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC150776 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC150776 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC150776 Gene

Proteins for LOC150776 Gene

Post-translational modifications for LOC150776 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC150776 Gene

Domains & Families for LOC150776 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC150776 Gene

Function for LOC150776 Gene

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC150776 Gene

Localization for LOC150776 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC150776 Gene

Pathways & Interactions for LOC150776 Gene

SuperPathways for LOC150776 Gene

No Data Available

Interacting Proteins for LOC150776 Gene

Gene Ontology (GO) - Biological Process for LOC150776 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC150776 Gene

Drugs & Compounds for LOC150776 Gene

No Compound Related Data Available

Transcripts for LOC150776 Gene

mRNA/cDNA for LOC150776 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LOC150776 Gene

Sphingomyelin phosphodiesterase 4, neutral membrane (neutral sphingomyelinase-3) pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LOC150776 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9
SP1: - - - -
SP2:
SP3: - - - -
SP4: -
SP5: -
SP6:

Relevant External Links for LOC150776 Gene

GeneLoc Exon Structure for
LOC150776

Expression for LOC150776 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LOC150776 Gene

SOURCE GeneReport for Unigene cluster for LOC150776 Gene:

Hs.535622
genes like me logo Genes that share expression patterns with LOC150776: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC150776 Gene

Orthologs for LOC150776 Gene

Evolution for LOC150776 Gene

ENSEMBL:
Gene Tree for LOC150776 (if available)
TreeFam:
Gene Tree for LOC150776 (if available)

No data available for Orthologs for LOC150776 Gene

Paralogs for LOC150776 Gene

No data available for Paralogs for LOC150776 Gene

Variants for LOC150776 Gene

Sequence variations from dbSNP and Humsavar for LOC150776 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000180253 -- 131,502,202(+) GGCCT(G/T)TACGT intron-variant
rs1000317872 -- 131,502,020(+) ACTAA(C/T)GCAGG intron-variant
rs1000385493 -- 131,506,911(+) TCTGC(A/C)CACCC intron-variant
rs1000797866 -- 131,510,403(+) CCTGT(A/G)GGCAG intron-variant
rs1000830413 -- 131,510,641(+) GGCAG(G/T)AGGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LOC150776 Gene

Variant ID Type Subtype PubMed ID
dgv4075n100 CNV gain 25217958
dgv4077n100 CNV gain 25217958
dgv4079n100 CNV loss 25217958
dgv4080n100 CNV gain 25217958
dgv476n27 CNV loss 19166990
esv2662689 CNV deletion 23128226
esv2670824 CNV deletion 23128226
esv2759092 CNV gain+loss 17122850
esv2760576 CNV gain+loss 21179565
esv34412 CNV gain 17911159
esv34704 CNV gain 17911159
esv3575300 CNV gain 25503493
esv3584079 CNV loss 25503493
esv3592483 CNV loss 21293372
esv3592484 CNV gain 21293372
esv3592485 CNV gain 21293372
esv3893359 CNV gain+loss 25118596
nsv1002963 CNV gain 25217958
nsv1006738 CNV gain 25217958
nsv1008539 CNV gain 25217958
nsv1014682 CNV loss 25217958
nsv10185 CNV gain+loss 18304495
nsv2926 CNV insertion 18451855
nsv428404 CNV loss 18775914
nsv459396 CNV gain 19166990
nsv470486 CNV loss 18288195
nsv524021 CNV loss 19592680
nsv583140 CNV gain 21841781
nsv583143 CNV gain+loss 21841781
nsv7327 OTHER inversion 18451855
nsv834376 CNV gain 17160897
nsv979124 CNV duplication 23825009
nsv997248 CNV loss 25217958

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for LOC150776 Gene

Disorders for LOC150776 Gene

Relevant External Links for LOC150776

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC150776

No disorders were found for LOC150776 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC150776 Gene

Publications for LOC150776 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 60
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for LOC150776 Gene

Sources for LOC150776 Gene

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