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Aliases for LOC108783654 Gene

Subcategory (RNA class) for LOC108783654 Gene

antisense

Quality Score for this RNA gene is

2

Aliases for LOC108783654 Gene

  • Uncharacterized LOC108783654 3
  • RP11-400F19.6 5

External Ids for LOC108783654 Gene

ORGUL Members for LOC108783654 Gene

Summaries for LOC108783654 Gene

GeneCards Summary for LOC108783654 Gene

LOC108783654 (Uncharacterized LOC108783654) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC108783654 Gene

Genomics for LOC108783654 Gene

Regulatory Elements for LOC108783654 Gene

Enhancers for LOC108783654 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G043322 1.7 Ensembl ENCODE dbSUPER 31.8 -768.4 -768415 1.6 MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 ZNF263 ENSG00000267340 ENSG00000267002 ASB16-AS1 HMGN1P29 DHX8 NBR2 ENSG00000267765 HSD17B1 CCR10 LINC00910
GH17G041986 1.2 dbSUPER 29.3 +567.2 567160 2.0 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 ZNF143 ZNF416 ZNF548 KAT2A CNTNAP1 ENSG00000267758 ENSG00000267765 HSD17B1 ZNF385C ENSG00000259623 LOC108783654 HSD17B1P1 CCR10
GH17G042392 1.2 ENCODE dbSUPER 20.6 +161.8 161756 0.9 HDGF ZNF493 ZFP64 YY1 ZNF302 ZNF202 JUNB REST TSHZ1 ZNF623 ENSG00000267340 ENSG00000267002 ENSG00000267765 ENSG00000259623 CNTNAP1 HMGN1P29 LOC108783654 TUBG2 KLHL10 HSD17B1
GH17G043552 1.3 Ensembl ENCODE 18.1 -999.8 -999755 4.9 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 FOS SP3 SP5 ZNF592 ENSG00000267002 ENSG00000267340 ETV4 ASB16-AS1 LOC108783654 MEOX1 RPL29P31 HMGN2P15 RPL27 RAMP2-AS1
GH17G041959 1.6 Ensembl ENCODE dbSUPER 12.5 +594.9 594870 1.7 HDGF PKNOX1 CREB3L1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 SLC30A9 NT5C3B LOC108783654 ENSG00000267758 KLHL11 CNP GC17M041929
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC108783654 on UCSC Golden Path with GeneCards custom track

Promoters for LOC108783654 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000094426 -52 1201 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143

Genomic Location for LOC108783654 Gene

Chromosome:
17
Start:
42,552,436 bp from pter
End:
42,554,748 bp from pter
Size:
2,313 bases
Orientation:
Minus strand

Genomic View for LOC108783654 Gene

Genes around LOC108783654 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC108783654 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC108783654 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LOC108783654 Gene

Proteins for LOC108783654 Gene

Post-translational modifications for LOC108783654 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC108783654 Gene

Domains & Families for LOC108783654 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC108783654 Gene

Function for LOC108783654 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC108783654 Gene

Localization for LOC108783654 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC108783654 Gene

Pathways & Interactions for LOC108783654 Gene

SuperPathways for LOC108783654 Gene

No Data Available

Interacting Proteins for LOC108783654 Gene

Gene Ontology (GO) - Biological Process for LOC108783654 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC108783654 Gene

Drugs & Compounds for LOC108783654 Gene

No Compound Related Data Available

Transcripts for LOC108783654 Gene

mRNA/cDNA for LOC108783654 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC108783654 Gene

No ASD Table

Relevant External Links for LOC108783654 Gene

GeneLoc Exon Structure for
LOC108783654

Expression for LOC108783654 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC108783654 Gene

Orthologs for LOC108783654 Gene

Evolution for LOC108783654 Gene

ENSEMBL:
Gene Tree for LOC108783654 (if available)
TreeFam:
Gene Tree for LOC108783654 (if available)

No data available for Orthologs for LOC108783654 Gene

Paralogs for LOC108783654 Gene

No data available for Paralogs for LOC108783654 Gene

Variants for LOC108783654 Gene

Sequence variations from dbSNP and Humsavar for LOC108783654 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000027727 -- 42,553,972(+) CTGGG(A/G)CGATC intron-variant, nc-transcript-variant
rs1001146974 -- 42,555,753(+) GTCAG(A/G)CTGGT upstream-variant-2KB
rs1002850516 -- 42,555,396(+) AGTCC(A/G)TATTA downstream-variant-500B, upstream-variant-2KB
rs1003758694 -- 42,553,696(+) GCGGG(C/G)GGGGT intron-variant, nc-transcript-variant
rs1006683899 -- 42,554,912(+) AGCTC(C/G)GCGAT nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon, missense

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC108783654 Gene

Disorders for LOC108783654 Gene

Relevant External Links for LOC108783654

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LOC108783654

No disorders were found for LOC108783654 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC108783654 Gene

Publications for LOC108783654 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Widespread occurrence of antisense transcription in the human genome. (PMID: 12640466) Yelin R. … Rotman G. (Nat. Biotechnol. 2003) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for LOC108783654 Gene

Sources for LOC108783654 Gene

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