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Aliases for LOC108783654 Gene

Subcategory (RNA class) for LOC108783654 Gene

antisense

Quality Score for this RNA gene is

2

Aliases for LOC108783654 Gene

  • Uncharacterized LOC108783654 3
  • AC067852.2 5

External Ids for LOC108783654 Gene

ORGUL Members for LOC108783654 Gene

Summaries for LOC108783654 Gene

GeneCards Summary for LOC108783654 Gene

LOC108783654 (Uncharacterized LOC108783654) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for LOC108783654 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC108783654 Gene

Genomics for LOC108783654 Gene

GeneHancer (GH) Regulatory Elements for LOC108783654 Gene

Promoters and enhancers for LOC108783654 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I042551 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 +1.1 1071 4.3 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B HSD17B1 LOC108783654 TUBG2 PSMC3IP MLX KLHL10 ENSG00000267340 STAT5A ENSG00000266929
GH17I042556 Enhancer 0.8 ENCODE dbSUPER 550.8 -1.6 -1630 0.2 SP3 SP2 SKI ZFHX2 MTA3 GLIS2 IKZF1 GLIS1 EGR2 ZNF18 LOC108783654 PSMC3IP TUBG2 GC17M042557 ENSG00000266929
GH17I043322 Enhancer 1.5 Ensembl ENCODE dbSUPER 67.3 -768.4 -768415 1.6 CLOCK MLX ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF213 ZNF416 ZNF143 ENSG00000267340 UBTF ASB16-AS1 ENSG00000267002 DHX8 HMGN1P29 TMUB2 NBR2 LINC00910 PLEKHH3
GH17I041687 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 18.3 +864.3 864349 6.1 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 EIF1 GC17P041691 GC17P041692 ENSG00000267758 ENSG00000259623 KLHL10 CNTNAP1 NT5C3B STAT5A CCR10
GH17I042672 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 18.4 -124.0 -123950 11.4 MLX ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF213 ZNF143 ZNF263 SP3 CNTNAP1 CCR10 PLEKHH3 ENSG00000267042 TUBG2 HSD17B1P1 ENSG00000267002 HMGN1P29 HMGN2P15 ENSG00000259623
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LOC108783654 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LOC108783654 Gene

Genomic Locations for LOC108783654 Gene
chr17:42,552,436-42,554,748
(GRCh38/hg38)
Size:
2,313 bases
Orientation:
Minus strand
chr17:40,704,456-40,706,766
(GRCh37/hg19)

Genomic View for LOC108783654 Gene

Genes around LOC108783654 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC108783654 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC108783654 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LOC108783654 Gene

Proteins for LOC108783654 Gene

Post-translational modifications for LOC108783654 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC108783654 Gene

Domains & Families for LOC108783654 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC108783654 Gene

Function for LOC108783654 Gene

Phenotypes From GWAS Catalog for LOC108783654 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC108783654 Gene

Localization for LOC108783654 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LOC108783654 Gene

Pathways & Interactions for LOC108783654 Gene

SuperPathways for LOC108783654 Gene

No Data Available

Interacting Proteins for LOC108783654 Gene

Gene Ontology (GO) - Biological Process for LOC108783654 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC108783654 Gene

Drugs & Compounds for LOC108783654 Gene

No Compound Related Data Available

Transcripts for LOC108783654 Gene

mRNA/cDNA for LOC108783654 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC108783654 Gene

No ASD Table

Relevant External Links for LOC108783654 Gene

GeneLoc Exon Structure for
LOC108783654

Expression for LOC108783654 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC108783654 Gene

Orthologs for LOC108783654 Gene

Evolution for LOC108783654 Gene

ENSEMBL:
Gene Tree for LOC108783654 (if available)
TreeFam:
Gene Tree for LOC108783654 (if available)

No data available for Orthologs for LOC108783654 Gene

Paralogs for LOC108783654 Gene

No data available for Paralogs for LOC108783654 Gene

Variants for LOC108783654 Gene

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Additional Variant Information for LOC108783654 Gene

Disorders for LOC108783654 Gene

Additional Disease Information for LOC108783654

No disorders were found for LOC108783654 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LOC108783654 Gene

Publications for LOC108783654 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Widespread occurrence of antisense transcription in the human genome. (PMID: 12640466) Yelin R … Rotman G (Nature biotechnology 2003) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LOC108783654 Gene

Sources for LOC108783654 Gene

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