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Aliases for LOC105378674 Gene

Subcategory (RNA class) for LOC105378674 Gene

ncRNA

Quality Score for this RNA gene is

2

Aliases for LOC105378674 Gene

  • Uncharacterized LOC105378674 3
  • RP4-739H11.3 5

External Ids for LOC105378674 Gene

Previous GeneCards Identifiers for LOC105378674 Gene

  • GC01U904429

Summaries for LOC105378674 Gene

GeneCards Summary for LOC105378674 Gene

LOC105378674 (Uncharacterized LOC105378674) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LOC105378674 Gene

Genomics for LOC105378674 Gene

Regulatory Elements for LOC105378674 Gene

Enhancers for LOC105378674 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G040708 1.7 FANTOM5 ENCODE dbSUPER 15.9 -23.7 -23651 6.1 PKNOX1 FOXA2 CREB3L1 ARNT WRNIP1 ARID4B SIN3A FEZF1 DMAP1 YY1 RIMS3 EXO5 RLF LOC105378674 MIR30E MIR30C1 ZFP69 NFYC KCNQ4 ZNF684
GH01G040698 1.6 FANTOM5 Ensembl ENCODE dbSUPER 15.9 -12.0 -11955 2.0 HDGF TBP ATF1 ZBTB40 ZNF121 FOS CREM ZNF362 CEBPB NCOA1 RIMS3 LOC105378674 MIR30E MIR30C1 NFYC ZNF684 KCNQ4 EXO5 CITED4 ZFP69
GH01G040690 1.4 ENCODE dbSUPER 16.8 -5.1 -5114 4.4 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF263 SP3 NFYC TBX21 MEF2D RIMS3 ENSG00000259943 LOC105378674 ZFP69 NFYC-AS1 MIR30C1 MIR30E KCNQ4 GC01P040752
GH01G040735 1.3 Ensembl ENCODE dbSUPER 15.8 -48.6 -48598 1.3 ZBTB21 TAL1 JUN MAX CEBPG ZNF335 FOSL1 TCF12 ZNF316 GATA2 RIMS3 LOC105378674 MIR30C1 NFYC KCNQ4 GC01P040752 NFYC-AS1
GH01G040703 1.2 Ensembl ENCODE dbSUPER 15.9 -16.2 -16213 1.2 HDGF PKNOX1 JUN ZNF384 FOSL1 PATZ1 FOS IKZF2 SMARCE1 ZNF362 RIMS3 LOC105378674 MIR30C1 MIR30E LOC105378672 KCNQ4 NFYC-AS1 GC01P040752
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around LOC105378674 on UCSC Golden Path with GeneCards custom track

Genomic Location for LOC105378674 Gene

Chromosome:
1
Start:
40,668,540 bp from pter
End:
40,687,588 bp from pter
Size:
19,049 bases
Orientation:
Minus strand

Genomic View for LOC105378674 Gene

Genes around LOC105378674 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LOC105378674 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LOC105378674 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LOC105378674 Gene

Proteins for LOC105378674 Gene

Post-translational modifications for LOC105378674 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LOC105378674 Gene

Domains & Families for LOC105378674 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LOC105378674 Gene

Function for LOC105378674 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LOC105378674 Gene

Localization for LOC105378674 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for LOC105378674 Gene

Pathways & Interactions for LOC105378674 Gene

SuperPathways for LOC105378674 Gene

No Data Available

Interacting Proteins for LOC105378674 Gene

Gene Ontology (GO) - Biological Process for LOC105378674 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LOC105378674 Gene

Drugs & Compounds for LOC105378674 Gene

No Compound Related Data Available

Transcripts for LOC105378674 Gene

mRNA/cDNA for LOC105378674 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LOC105378674 Gene

No ASD Table

Relevant External Links for LOC105378674 Gene

GeneLoc Exon Structure for
LOC105378674

Expression for LOC105378674 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LOC105378674 Gene

Orthologs for LOC105378674 Gene

Evolution for LOC105378674 Gene

ENSEMBL:
Gene Tree for LOC105378674 (if available)
TreeFam:
Gene Tree for LOC105378674 (if available)

No data available for Orthologs for LOC105378674 Gene

Paralogs for LOC105378674 Gene

No data available for Paralogs for LOC105378674 Gene

Variants for LOC105378674 Gene

Sequence variations from dbSNP and Humsavar for LOC105378674 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000099129 -- 40,669,173(+) AGGGA(A/G)CTAAC intron-variant
rs1000391599 -- 40,675,871(+) TGCAG(C/T)GAGTG intron-variant, upstream-variant-2KB
rs1000637782 -- 40,668,851(+) GCCCC(G/T)CCAAG intron-variant, nc-transcript-variant
rs1001471661 -- 40,674,218(+) ATTAC(A/G)ACATG intron-variant, nc-transcript-variant
rs1001499301 -- 40,670,465(+) CCTTG(C/T)CTGTA intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for LOC105378674 Gene

Disorders for LOC105378674 Gene

No disorders were found for LOC105378674 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LOC105378674 Gene

Publications for LOC105378674 Gene

No publications were found for LOC105378674 Gene.

Products for LOC105378674 Gene

Sources for LOC105378674 Gene

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